CRISPRone

CRISPRone report for GCA_900164325.1_16780_8_9

♦ Seq 1: FUMH01000015.1 Clostridioides difficile strain VRECD0010 genome assembly, contig: ERS716996SCcontig000015, whole genome shotgun sequence

⇒Summary: seq-len = 36287 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 14282-14377 bp Zoom in on locus 1 x2 CRISPR array Location: 14282-14377 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 14282-14377 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 14282-14377 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUMH01000003.1 Clostridioides difficile strain VRECD0010 genome assembly, contig: ERS716996SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 592811 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 66506-67389 bp 2 Locus 2: 175901-176523 bp 3 Locus 3: 401210-401696 bp Zoom in on locus 1 x14 Zoom in on locus 2 x10 Zoom in on locus 3 x8 CRISPR array Location: 66506-67389 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 66506-67389 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 175901-176523 bp Num of repeats: 10 Spacers: s14-s22 CRISPR array Location: 175901-176523 bp Num of repeats: 10 Spacers: s14-s22 CRISPR array Location: 401210-401696 bp Num of repeats: 8 Spacers: s23-s29 CRISPR array Location: 401210-401696 bp Num of repeats: 8 Spacers: s23-s29 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 66506-67389 bp]: array | spacers
           [Locus range 175901-176523 bp]: array | spacers
           [Locus range 401210-401696 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUMH01000001.1 Clostridioides difficile strain VRECD0010 genome assembly, contig: ERS716996SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1167989 bp; # of CRISPR array = 3; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 111585-112606 bp 2 Locus 2: 397133-397359 bp 3 Locus 3: 829643-840616 bp 4 Locus 4: 891816-901548 bp 5 Locus 5: 976809-977628 bp Zoom in on locus 1 x16 Zoom in on locus 2 x4 Zoom in on locus 3 Zoom in on locus 4 Zoom in on locus 5 x13 CRISPR array Location: 111585-112606 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 111585-112606 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 397133-397359 bp Num of repeats: 4 Spacers: s16-s18 CRISPR array Location: 397133-397359 bp Num of repeats: 4 Spacers: s16-s18 Gene: cd06127:DEDDh Type: Type-I Location: 829643-830149 bp Gene: unk Type: unknown Location: 830308-830976 bp Gene: unk Type: unknown Location: 831389-831895 bp Gene: cd06127:DEDDh Type: Type-I Location: 832267-833304 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 840131-840616 bp Gene: cd09641:cas3HD Type: Type-I Location: 891816-894224 bp Gene: cd09693:cas5 Type: Type-I Location: 894251-895048 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 895064-896077 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 896096-897571 bp Gene: pfam01881:cas6 Type: other Location: 897576-898313 bp Gene: unk Type: unknown Location: 898627-898845 bp Gene: unk Type: unknown Location: 898871-899086 bp Gene: cas14:cas14 Type: Type-V Location: 899114-900286 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 900439-901548 bp CRISPR array Location: 976809-977628 bp Num of repeats: 13 Spacers: s19-s30 CRISPR array Location: 976809-977628 bp Num of repeats: 13 Spacers: s19-s30 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 111585-112606 bp]: array | spacers
           [Locus range 397133-397359 bp]: array | spacers
           [Locus range 976809-977628 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUMH01000005.1 Clostridioides difficile strain VRECD0010 genome assembly, contig: ERS716996SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 346507 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 265603-276240 bp Zoom in on locus 1 x17 CRISPR array Location: 265603-266681 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 265603-266681 bp Num of repeats: 17 Spacers: s1-s16 Gene: cd09725:cas2 Type: universal Location: 266865-267131 bp Gene: cd09722:cas1 Type: universal Location: 267134-268114 bp Gene: pfam01930:cas4 Type: Type-I Location: 268117-268635 bp Gene: cd09641:cas3HD Type: Type-I Location: 268683-271004 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 271015-271716 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 271718-272632 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 272634-274505 bp Gene: pfam01881:cas6 Type: other Location: 274511-275305 bp Gene: pfam13280:WYL Type: other Location: 275326-275724 bp Gene: COG2378:WYL Type: other Location: 275845-276240 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 265603-266681 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)