CRISPRone

CRISPRone report for GCA_900164345.1_16780_8_61

♦ Seq 1: FUMQ01000006.1 Clostridioides difficile strain VRECD0175 genome assembly, contig: ERS717048SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 226799 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 140197-142808 bp Zoom in on locus 1 x11 x4 CRISPR array Location: 140197-140882 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 140197-140882 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 142587-142808 bp Num of repeats: 4 Spacers: s11-s13 CRISPR array Location: 142587-142808 bp Num of repeats: 4 Spacers: s11-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 140197-140882 bp]: array | spacers
           [Locus range 142587-142808 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUMQ01000001.1 Clostridioides difficile strain VRECD0175 genome assembly, contig: ERS717048SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1162861 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 239639-240135 bp 2 Locus 2: 313417-321763 bp 3 Locus 3: 485183-485735 bp 4 Locus 4: 858536-858827 bp Zoom in on locus 1 x8 Zoom in on locus 2 Zoom in on locus 3 x9 Zoom in on locus 4 x5 CRISPR array Location: 239639-240135 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 239639-240135 bp Num of repeats: 8 Spacers: s1-s7 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 313417-314526 bp Gene: unk Type: unknown Location: 314985-315161 bp Gene: pfam01881:cas6 Type: other Location: 315262-315999 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 316004-317479 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 317499-318515 bp Gene: cd09693:cas5 Type: Type-I Location: 318531-319328 bp Gene: cd09641:cas3HD Type: Type-I Location: 319355-321763 bp CRISPR array Location: 485183-485735 bp Num of repeats: 9 Spacers: s8-s15 CRISPR array Location: 485183-485735 bp Num of repeats: 9 Spacers: s8-s15 CRISPR array Location: 858536-858827 bp Num of repeats: 5 Spacers: s16-s19 CRISPR array Location: 858536-858827 bp Num of repeats: 5 Spacers: s16-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 239639-240135 bp]: array | spacers
           [Locus range 485183-485735 bp]: array | spacers
           [Locus range 858536-858827 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUMQ01000003.1 Clostridioides difficile strain VRECD0175 genome assembly, contig: ERS717048SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 632922 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 191266-201162 bp Zoom in on locus 1 x6 Gene: pfam13280:WYL Type: other Location: 191266-192153 bp Gene: pfam01881:cas6 Type: other Location: 192231-192968 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 192974-194851 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 194853-195767 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 195769-196470 bp Gene: cd09641:cas3HD Type: Type-I Location: 196481-198802 bp Gene: pfam01930:cas4 Type: Type-I Location: 198817-199368 bp Gene: cd09722:cas1 Type: universal Location: 199371-200351 bp Gene: cd09725:cas2 Type: universal Location: 200354-200620 bp CRISPR array Location: 200804-201162 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 200804-201162 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 200804-201162 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUMQ01000002.1 Clostridioides difficile strain VRECD0175 genome assembly, contig: ERS717048SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 724039 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 330042-330866 bp 2 Locus 2: 441186-442995 bp 3 Locus 3: 523606-523896 bp 4 Locus 4: 659060-660395 bp Zoom in on locus 1 x13 Zoom in on locus 2 x28 Zoom in on locus 3 x5 Zoom in on locus 4 x21 CRISPR array Location: 330042-330866 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 330042-330866 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 441186-442995 bp Num of repeats: 28 Spacers: s13-s39 CRISPR array Location: 441186-442995 bp Num of repeats: 28 Spacers: s13-s39 CRISPR array Location: 523606-523896 bp Num of repeats: 5 Spacers: s40-s43 CRISPR array Location: 523606-523896 bp Num of repeats: 5 Spacers: s40-s43 CRISPR array Location: 659060-660395 bp Num of repeats: 21 Spacers: s44-s63 CRISPR array Location: 659060-660395 bp Num of repeats: 21 Spacers: s44-s63 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 330042-330866 bp]: array | spacers
           [Locus range 441186-442995 bp]: array | spacers
           [Locus range 523606-523896 bp]: array | spacers
           [Locus range 659060-660395 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)