CRISPRone

CRISPRone report for GCA_900164375.1_16780_8_12

♦ Seq 1: FUMW01000018.1 Clostridioides difficile strain VRECD0039 genome assembly, contig: ERS716999SCcontig000018, whole genome shotgun sequence

⇒Summary: seq-len = 14872 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8827-9710 bp Zoom in on locus 1 x14 CRISPR array Location: 8827-9710 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 8827-9710 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8827-9710 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUMW01000004.1 Clostridioides difficile strain VRECD0039 genome assembly, contig: ERS716999SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 307404 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62183-73090 bp 2 Locus 2: 287542-287635 bp Zoom in on locus 1 x21 Zoom in on locus 2 x2 CRISPR array Location: 62183-63525 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 62183-63525 bp Num of repeats: 21 Spacers: s1-s20 Gene: cd09725:cas2 Type: universal Location: 63709-63975 bp Gene: cd09722:cas1 Type: universal Location: 63978-64958 bp Gene: pfam01930:cas4 Type: Type-I Location: 64961-65479 bp Gene: COG1203:cas3 Type: Type-I Location: 65527-67848 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 67859-68560 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 68562-69476 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 69478-71355 bp Gene: pfam01881:cas6 Type: other Location: 71361-72155 bp Gene: pfam13280:WYL Type: other Location: 72176-73090 bp CRISPR array Location: 287542-287635 bp Num of repeats: 2 Spacers: s21-s21 CRISPR array Location: 287542-287635 bp Num of repeats: 2 Spacers: s21-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 62183-63525 bp]: array | spacers
           [Locus range 287542-287635 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUMW01000002.1 Clostridioides difficile strain VRECD0039 genome assembly, contig: ERS716999SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 874804 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 416631-417390 bp 2 Locus 2: 527681-528304 bp 3 Locus 3: 707216-708299 bp Zoom in on locus 1 x12 Zoom in on locus 2 x10 Zoom in on locus 3 x17 CRISPR array Location: 416631-417390 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 416631-417390 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 527681-528304 bp Num of repeats: 10 Spacers: s12-s20 CRISPR array Location: 527681-528304 bp Num of repeats: 10 Spacers: s12-s20 CRISPR array Location: 707216-708299 bp Num of repeats: 17 Spacers: s21-s36 CRISPR array Location: 707216-708299 bp Num of repeats: 17 Spacers: s21-s36 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 416631-417390 bp]: array | spacers
           [Locus range 527681-528304 bp]: array | spacers
           [Locus range 707216-708299 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUMW01000001.1 Clostridioides difficile strain VRECD0039 genome assembly, contig: ERS716999SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1036218 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 186396-186556 bp 2 Locus 2: 546687-547573 bp 3 Locus 3: 709554-717900 bp 4 Locus 4: 791183-791740 bp Zoom in on locus 1 x3 Zoom in on locus 2 x14 Zoom in on locus 3 Zoom in on locus 4 x9 CRISPR array Location: 186396-186556 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 186396-186556 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 546687-547573 bp Num of repeats: 14 Spacers: s3-s15 CRISPR array Location: 546687-547573 bp Num of repeats: 14 Spacers: s3-s15 Gene: cd09641:cas3HD Type: Type-I Location: 709554-711962 bp Gene: cd09693:cas5 Type: Type-I Location: 711989-712786 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 712802-713818 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 713838-715313 bp Gene: pfam01881:cas6 Type: other Location: 715318-716055 bp Gene: unk Type: unknown Location: 716156-716332 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 716791-717900 bp CRISPR array Location: 791183-791740 bp Num of repeats: 9 Spacers: s16-s23 CRISPR array Location: 791183-791740 bp Num of repeats: 9 Spacers: s16-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 186396-186556 bp]: array | spacers
           [Locus range 546687-547573 bp]: array | spacers
           [Locus range 791183-791740 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)