CRISPRone

CRISPRone report for GCA_900164385.1_16780_8_18

♦ Seq 1: FUMY01000004.1 Clostridioides difficile strain VRECD0128 genome assembly, contig: ERS717005SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 490214 bp; # of CRISPR array = 1; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 102695-113662 bp 2 Locus 2: 164906-173248 bp 3 Locus 3: 250456-250879 bp Zoom in on locus 1 Zoom in on locus 2 Zoom in on locus 3 x7 Gene: cd06127:DEDDh Type: Type-I Location: 102695-103201 bp Gene: unk Type: unknown Location: 103360-104022 bp Gene: unk Type: unknown Location: 104435-104941 bp Gene: cd06127:DEDDh Type: Type-I Location: 105313-106350 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 113177-113662 bp Gene: cd09641:cas3HD Type: Type-I Location: 164906-167314 bp Gene: cd09693:cas5 Type: Type-I Location: 167341-168138 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 168154-169167 bp Gene: mkCas0150:cas11b Type: Subtype-I-B Location: 169184-170659 bp Gene: pfam01881:cas6 Type: other Location: 170664-171401 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 172139-173248 bp CRISPR array Location: 250456-250879 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 250456-250879 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 250456-250879 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUMY01000003.1 Clostridioides difficile strain VRECD0128 genome assembly, contig: ERS717005SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 598450 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 381267-381624 bp 2 Locus 2: 490061-490554 bp 3 Locus 3: 580982-581078 bp Zoom in on locus 1 x6 Zoom in on locus 2 x8 Zoom in on locus 3 x2 CRISPR array Location: 381267-381624 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 381267-381624 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 490061-490554 bp Num of repeats: 8 Spacers: s6-s12 CRISPR array Location: 490061-490554 bp Num of repeats: 8 Spacers: s6-s12 CRISPR array Location: 580982-581078 bp Num of repeats: 2 Spacers: s13-s13 CRISPR array Location: 580982-581078 bp Num of repeats: 2 Spacers: s13-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 381267-381624 bp]: array | spacers
           [Locus range 490061-490554 bp]: array | spacers
           [Locus range 580982-581078 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUMY01000012.1 Clostridioides difficile strain VRECD0128 genome assembly, contig: ERS717005SCcontig000012, whole genome shotgun sequence

⇒Summary: seq-len = 78932 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 73540-74028 bp Zoom in on locus 1 x8 CRISPR array Location: 73540-74028 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 73540-74028 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 73540-74028 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUMY01000001.1 Clostridioides difficile strain VRECD0128 genome assembly, contig: ERS717005SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 896697 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 265269-275268 bp Zoom in on locus 1 x7 CRISPR array Location: 265269-265691 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 265269-265691 bp Num of repeats: 7 Spacers: s1-s6 Gene: cd09725:cas2 Type: universal Location: 265875-266141 bp Gene: cd09722:cas1 Type: universal Location: 266144-267124 bp Gene: pfam01930:cas4 Type: Type-I Location: 267127-267645 bp Gene: COG1203:cas3 Type: Type-I Location: 267693-270014 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 270025-270726 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 270728-271642 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 271644-273494 bp Gene: pfam01881:cas6 Type: other Location: 273500-274294 bp Gene: pfam13280:WYL Type: other Location: 274315-275268 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 265269-265691 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUMY01000002.1 Clostridioides difficile strain VRECD0128 genome assembly, contig: ERS717005SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 778268 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 110352-110908 bp 2 Locus 2: 434760-434985 bp Zoom in on locus 1 x9 Zoom in on locus 2 x4 CRISPR array Location: 110352-110908 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 110352-110908 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 434760-434985 bp Num of repeats: 4 Spacers: s9-s11 CRISPR array Location: 434760-434985 bp Num of repeats: 4 Spacers: s9-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 110352-110908 bp]: array | spacers
           [Locus range 434760-434985 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FUMY01000022.1 Clostridioides difficile strain VRECD0128 genome assembly, contig: ERS717005SCcontig000022, whole genome shotgun sequence

⇒Summary: seq-len = 14507 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4828-8360 bp Zoom in on locus 1 x5 x12 CRISPR array Location: 4828-5122 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 4828-5122 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 7606-8360 bp Num of repeats: 12 Spacers: s5-s15 CRISPR array Location: 7606-8360 bp Num of repeats: 12 Spacers: s5-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4828-5122 bp]: array | spacers
           [Locus range 7606-8360 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: FUMY01000020.1 Clostridioides difficile strain VRECD0128 genome assembly, contig: ERS717005SCcontig000020, whole genome shotgun sequence

⇒Summary: seq-len = 17778 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7634-11480 bp Zoom in on locus 1 x2 x7 CRISPR array Location: 7634-7729 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 7634-7729 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 11059-11480 bp Num of repeats: 7 Spacers: s2-s7 CRISPR array Location: 11059-11480 bp Num of repeats: 7 Spacers: s2-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7634-7729 bp]: array | spacers
           [Locus range 11059-11480 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)