CRISPRone

CRISPRone report for GCA_900164405.1_16780_8_56

♦ Seq 1: FUMN01000019.1 Clostridioides difficile strain VRECD0168 genome assembly, contig: ERS717043SCcontig000019, whole genome shotgun sequence

⇒Summary: seq-len = 9900 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3346-8680 bp Zoom in on locus 1 x4 x13 x4 CRISPR array Location: 3346-3570 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 3346-3570 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 7033-7852 bp Num of repeats: 13 Spacers: s4-s15 CRISPR array Location: 7033-7852 bp Num of repeats: 13 Spacers: s4-s15 CRISPR array Location: 8455-8680 bp Num of repeats: 4 Spacers: s16-s18 CRISPR array Location: 8455-8680 bp Num of repeats: 4 Spacers: s16-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3346-3570 bp]: array | spacers
           [Locus range 7033-7852 bp]: array | spacers
           [Locus range 8455-8680 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUMN01000009.1 Clostridioides difficile strain VRECD0168 genome assembly, contig: ERS717043SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 97764 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 79570-80061 bp Zoom in on locus 1 x8 CRISPR array Location: 79570-80061 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 79570-80061 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 79570-80061 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUMN01000018.1 Clostridioides difficile strain VRECD0168 genome assembly, contig: ERS717043SCcontig000018, whole genome shotgun sequence

⇒Summary: seq-len = 15193 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11884-12111 bp Zoom in on locus 1 x4 CRISPR array Location: 11884-12111 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 11884-12111 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 11884-12111 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUMN01000005.1 Clostridioides difficile strain VRECD0168 genome assembly, contig: ERS717043SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 212827 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 121334-121761 bp Zoom in on locus 1 x7 CRISPR array Location: 121334-121761 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 121334-121761 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 121334-121761 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUMN01000001.1 Clostridioides difficile strain VRECD0168 genome assembly, contig: ERS717043SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1957374 bp; # of CRISPR array = 4; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 863646-864002 bp 2 Locus 2: 937268-945133 bp 3 Locus 3: 1107098-1107986 bp 4 Locus 4: 1406006-1407280 bp 5 Locus 5: 1795459-1796999 bp Zoom in on locus 1 x6 Zoom in on locus 2 Zoom in on locus 3 x14 Zoom in on locus 4 x20 Zoom in on locus 5 x24 CRISPR array Location: 863646-864002 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 863646-864002 bp Num of repeats: 6 Spacers: s1-s5 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 937268-938377 bp Gene: pfam01881:cas6 Type: other Location: 938635-939372 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 939377-940852 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 940872-941885 bp Gene: cd09693:cas5 Type: Type-I Location: 941901-942698 bp Gene: cd09641:cas3HD Type: Type-I Location: 942725-945133 bp CRISPR array Location: 1107098-1107986 bp Num of repeats: 14 Spacers: s6-s18 CRISPR array Location: 1107098-1107986 bp Num of repeats: 14 Spacers: s6-s18 CRISPR array Location: 1406006-1407280 bp Num of repeats: 20 Spacers: s19-s37 CRISPR array Location: 1406006-1407280 bp Num of repeats: 20 Spacers: s19-s37 CRISPR array Location: 1795459-1796999 bp Num of repeats: 24 Spacers: s38-s60 CRISPR array Location: 1795459-1796999 bp Num of repeats: 24 Spacers: s38-s60 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 863646-864002 bp]: array | spacers
           [Locus range 1107098-1107986 bp]: array | spacers
           [Locus range 1406006-1407280 bp]: array | spacers
           [Locus range 1795459-1796999 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)