CRISPRone

CRISPRone report for GCA_900164415.1_16780_8_64

♦ Seq 1: FUMI01000005.1 Clostridioides difficile strain VRECD0178 genome assembly, contig: ERS717051SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 378168 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 291667-291828 bp Zoom in on locus 1 x3 CRISPR array Location: 291667-291828 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 291667-291828 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 291667-291828 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUMI01000003.1 Clostridioides difficile strain VRECD0178 genome assembly, contig: ERS717051SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 576361 bp; # of CRISPR array = 3; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252835-263972 bp 2 Locus 2: 486355-486448 bp 3 Locus 3: 511653-512737 bp Zoom in on locus 1 x25 Zoom in on locus 2 x2 Zoom in on locus 3 x17 CRISPR array Location: 252835-254434 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 252835-254434 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09725:cas2 Type: universal Location: 254618-254884 bp Gene: cd09722:cas1 Type: universal Location: 254887-255867 bp Gene: pfam01930:cas4 Type: Type-I Location: 255870-256388 bp Gene: COG1203:cas3 Type: Type-I Location: 256436-258757 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 258768-259469 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 259471-260385 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 260387-262237 bp Gene: pfam01881:cas6 Type: other Location: 262243-263037 bp Gene: pfam13280:WYL Type: other Location: 263058-263972 bp CRISPR array Location: 486355-486448 bp Num of repeats: 2 Spacers: s25-s25 CRISPR array Location: 486355-486448 bp Num of repeats: 2 Spacers: s25-s25 CRISPR array Location: 511653-512737 bp Num of repeats: 17 Spacers: s26-s41 CRISPR array Location: 511653-512737 bp Num of repeats: 17 Spacers: s26-s41 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252835-254434 bp]: array | spacers
           [Locus range 486355-486448 bp]: array | spacers
           [Locus range 511653-512737 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUMI01000004.1 Clostridioides difficile strain VRECD0178 genome assembly, contig: ERS717051SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 571332 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 80681-81297 bp 2 Locus 2: 244569-252890 bp 3 Locus 3: 326173-326530 bp Zoom in on locus 1 x10 Zoom in on locus 2 Zoom in on locus 3 x6 CRISPR array Location: 80681-81297 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 80681-81297 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09641:cas3HD Type: Type-I Location: 244569-246977 bp Gene: cd09693:cas5 Type: Type-I Location: 247004-247801 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 247817-248833 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 248853-250328 bp Gene: pfam01881:cas6 Type: other Location: 250333-251070 bp Gene: unk Type: unknown Location: 251171-251347 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 251781-252890 bp CRISPR array Location: 326173-326530 bp Num of repeats: 6 Spacers: s10-s14 CRISPR array Location: 326173-326530 bp Num of repeats: 6 Spacers: s10-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 80681-81297 bp]: array | spacers
           [Locus range 326173-326530 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUMI01000007.1 Clostridioides difficile strain VRECD0178 genome assembly, contig: ERS717051SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 170098 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 143875-145777 bp Zoom in on locus 1 x3 x2 CRISPR array Location: 143875-144035 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 143875-144035 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 145683-145777 bp Num of repeats: 2 Spacers: s3-s3 CRISPR array Location: 145683-145777 bp Num of repeats: 2 Spacers: s3-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 143875-144035 bp]: array | spacers
           [Locus range 145683-145777 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUMI01000001.1 Clostridioides difficile strain VRECD0178 genome assembly, contig: ERS717051SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 730466 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 232077-233161 bp 2 Locus 2: 444840-445333 bp 3 Locus 3: 555655-556347 bp Zoom in on locus 1 x17 Zoom in on locus 2 x8 Zoom in on locus 3 x11 CRISPR array Location: 232077-233161 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 232077-233161 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 444840-445333 bp Num of repeats: 8 Spacers: s17-s23 CRISPR array Location: 444840-445333 bp Num of repeats: 8 Spacers: s17-s23 CRISPR array Location: 555655-556347 bp Num of repeats: 11 Spacers: s24-s33 CRISPR array Location: 555655-556347 bp Num of repeats: 11 Spacers: s24-s33 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 232077-233161 bp]: array | spacers
           [Locus range 444840-445333 bp]: array | spacers
           [Locus range 555655-556347 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)