CRISPRone

CRISPRone report for GCA_900164425.1_16780_8_62

♦ Seq 1: FUMU01000019.1 Clostridioides difficile strain VRECD0176 genome assembly, contig: ERS717049SCcontig000019, whole genome shotgun sequence

⇒Summary: seq-len = 27859 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7136-9320 bp Zoom in on locus 1 x3 x4 CRISPR array Location: 7136-7295 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 7136-7295 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 9096-9320 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 9096-9320 bp Num of repeats: 4 Spacers: s3-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7136-7295 bp]: array | spacers
           [Locus range 9096-9320 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUMU01000001.1 Clostridioides difficile strain VRECD0176 genome assembly, contig: ERS717049SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 817259 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22899-24637 bp 2 Locus 2: 328473-328898 bp 3 Locus 3: 491399-499264 bp 4 Locus 4: 572545-572639 bp Zoom in on locus 1 x27 Zoom in on locus 2 x7 Zoom in on locus 3 Zoom in on locus 4 x2 CRISPR array Location: 22899-24637 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 22899-24637 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 328473-328898 bp Num of repeats: 7 Spacers: s27-s32 CRISPR array Location: 328473-328898 bp Num of repeats: 7 Spacers: s27-s32 Gene: cd09641:cas3HD Type: Type-I Location: 491399-493807 bp Gene: cd09693:cas5 Type: Type-I Location: 493834-494631 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 494647-495660 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 495680-497155 bp Gene: pfam01881:cas6 Type: other Location: 497160-497897 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 498155-499264 bp CRISPR array Location: 572545-572639 bp Num of repeats: 2 Spacers: s33-s33 CRISPR array Location: 572545-572639 bp Num of repeats: 2 Spacers: s33-s33 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 22899-24637 bp]: array | spacers
           [Locus range 328473-328898 bp]: array | spacers
           [Locus range 572545-572639 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUMU01000006.1 Clostridioides difficile strain VRECD0176 genome assembly, contig: ERS717049SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 285242 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252117-252345 bp Zoom in on locus 1 x4 CRISPR array Location: 252117-252345 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 252117-252345 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 252117-252345 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUMU01000004.1 Clostridioides difficile strain VRECD0176 genome assembly, contig: ERS717049SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 427289 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 164667-174913 bp Zoom in on locus 1 x11 Gene: pfam13280:WYL Type: other Location: 164667-165581 bp Gene: pfam01881:cas6 Type: other Location: 165659-166396 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 166402-168279 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 168281-169195 bp Gene: cd09693:cas5 Type: Type-I Location: 169197-169898 bp Gene: COG1203:cas3 Type: Type-I Location: 169909-172230 bp Gene: pfam01930:cas4 Type: Type-I Location: 172245-172796 bp Gene: cd09722:cas1 Type: universal Location: 172799-173779 bp Gene: cd09725:cas2 Type: universal Location: 173782-174048 bp CRISPR array Location: 174232-174913 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 174232-174913 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 174232-174913 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUMU01000002.1 Clostridioides difficile strain VRECD0176 genome assembly, contig: ERS717049SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 516053 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 53100-54445 bp 2 Locus 2: 229101-229592 bp 3 Locus 3: 339913-340336 bp Zoom in on locus 1 x21 Zoom in on locus 2 x8 Zoom in on locus 3 x7 CRISPR array Location: 53100-54445 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 53100-54445 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 229101-229592 bp Num of repeats: 8 Spacers: s21-s27 CRISPR array Location: 229101-229592 bp Num of repeats: 8 Spacers: s21-s27 CRISPR array Location: 339913-340336 bp Num of repeats: 7 Spacers: s28-s33 CRISPR array Location: 339913-340336 bp Num of repeats: 7 Spacers: s28-s33 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 53100-54445 bp]: array | spacers
           [Locus range 229101-229592 bp]: array | spacers
           [Locus range 339913-340336 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FUMU01000007.1 Clostridioides difficile strain VRECD0176 genome assembly, contig: ERS717049SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 220417 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29840-30002 bp Zoom in on locus 1 x3 CRISPR array Location: 29840-30002 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 29840-30002 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 29840-30002 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)