CRISPRone

CRISPRone report for GCA_900164435.1_16780_8_67

♦ Seq 1: FUMT01000021.1 Clostridioides difficile strain VRECD0078 genome assembly, contig: ERS717054SCcontig000021, whole genome shotgun sequence

⇒Summary: seq-len = 56844 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2050-3199 bp Zoom in on locus 1 x18 CRISPR array Location: 2050-3199 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 2050-3199 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2050-3199 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUMT01000001.1 Clostridioides difficile strain VRECD0078 genome assembly, contig: ERS717054SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 460799 bp; # of CRISPR array = 0; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 89367-97694 bp 2 Locus 2: 150297-161250 bp Zoom in on locus 1 Zoom in on locus 2 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 89367-90476 bp Gene: unk Type: unknown Location: 90929-91105 bp Gene: pfam01881:cas6 Type: other Location: 91206-91943 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 91948-93414 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 93433-94446 bp Gene: cd09693:cas5 Type: Type-I Location: 94462-95259 bp Gene: cd09641:cas3HD Type: Type-I Location: 95286-97694 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 150297-150782 bp Gene: cd06127:DEDDh Type: Type-I Location: 157597-158634 bp Gene: unk Type: unknown Location: 158998-159504 bp Gene: unk Type: unknown Location: 159917-160585 bp Gene: cd06127:DEDDh Type: Type-I Location: 160744-161250 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUMT01000035.1 Clostridioides difficile strain VRECD0078 genome assembly, contig: ERS717054SCcontig000035, whole genome shotgun sequence

⇒Summary: seq-len = 10311 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4990-5616 bp Zoom in on locus 1 x10 CRISPR array Location: 4990-5616 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 4990-5616 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4990-5616 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUMT01000010.1 Clostridioides difficile strain VRECD0078 genome assembly, contig: ERS717054SCcontig000010, whole genome shotgun sequence

⇒Summary: seq-len = 147307 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9816-21515 bp Zoom in on locus 1 x33 Gene: pfam13280:WYL Type: other Location: 9816-10769 bp Gene: pfam01881:cas6 Type: other Location: 10847-11584 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 11590-13440 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 13442-14356 bp Gene: cd09693:cas5 Type: Type-I Location: 14358-15059 bp Gene: COG1203:cas3 Type: Type-I Location: 15070-17391 bp Gene: pfam01930:cas4 Type: Type-I Location: 17406-17957 bp Gene: cd09722:cas1 Type: universal Location: 17960-18940 bp Gene: cd09725:cas2 Type: universal Location: 18943-19209 bp CRISPR array Location: 19393-21515 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 19393-21515 bp Num of repeats: 33 Spacers: s1-s32 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 19393-21515 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUMT01000004.1 Clostridioides difficile strain VRECD0078 genome assembly, contig: ERS717054SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 349432 bp; # of CRISPR array = 3; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 93651-105961 bp 2 Locus 2: 161374-162187 bp 3 Locus 3: 270176-281763 bp Zoom in on locus 1 x44 Zoom in on locus 2 x13 Zoom in on locus 3 x39 CRISPR array Location: 93651-96515 bp Num of repeats: 44 Spacers: s1-s43 CRISPR array Location: 93651-96515 bp Num of repeats: 44 Spacers: s1-s43 Gene: cd09718:cas1 Type: universal Location: 103917-105572 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 105584-105961 bp CRISPR array Location: 161374-162187 bp Num of repeats: 13 Spacers: s44-s55 CRISPR array Location: 161374-162187 bp Num of repeats: 13 Spacers: s44-s55 Gene: cd09725:cas2 Type: universal Location: 270176-270466 bp Gene: cd09722:cas1 Type: universal Location: 270677-271684 bp Gene: pfam01930:cas4 Type: Type-I Location: 271710-272204 bp CRISPR array Location: 272289-274821 bp Num of repeats: 39 Spacers: s56-s93 CRISPR array Location: 272289-274821 bp Num of repeats: 39 Spacers: s56-s93 Gene: unk Type: unknown Location: 272912-273040 bp Gene: cd09641:cas3HD Type: Type-I Location: 275011-277569 bp Gene: cd09693:cas5 Type: Type-I Location: 277593-278333 bp Gene: pfam05107:cas7b Type: Type-I Location: 278335-279324 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 279317-281056 bp Gene: cd09652:cas6 Type: other Location: 281068-281763 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 93651-96515 bp]: array | spacers
           [Locus range 161374-162187 bp]: array | spacers
           [Locus range 272289-274821 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)