CRISPRone

CRISPRone report for GCA_900164445.1_16780_8_58

♦ Seq 1: FUMO01000007.1 Clostridioides difficile strain VRECD0170 genome assembly, contig: ERS717045SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 229025 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 139373-142327 bp Zoom in on locus 1 x2 x4 x13 CRISPR array Location: 139373-139467 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 139373-139467 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 139612-139837 bp Num of repeats: 4 Spacers: s2-s4 CRISPR array Location: 139612-139837 bp Num of repeats: 4 Spacers: s2-s4 CRISPR array Location: 141513-142327 bp Num of repeats: 13 Spacers: s5-s16 CRISPR array Location: 141513-142327 bp Num of repeats: 13 Spacers: s5-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 139373-139467 bp]: array | spacers
           [Locus range 139612-139837 bp]: array | spacers
           [Locus range 141513-142327 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUMO01000012.1 Clostridioides difficile strain VRECD0170 genome assembly, contig: ERS717045SCcontig000012, whole genome shotgun sequence

⇒Summary: seq-len = 92899 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 24843-32125 bp Zoom in on locus 1 x17 Gene: cd09693:cas5 Type: Type-I Location: 24843-25490 bp Gene: pfam01881:cas6 Type: other Location: 25481-26245 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 26247-27395 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 27416-28486 bp Gene: COG1203:cas3 Type: Type-I Location: 28497-30479 bp CRISPR array Location: 31046-32125 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 31046-32125 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 31046-32125 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUMO01000005.1 Clostridioides difficile strain VRECD0170 genome assembly, contig: ERS717045SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 405188 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 141121-151018 bp Zoom in on locus 1 x6 Gene: pfam13280:WYL Type: other Location: 141121-142008 bp Gene: pfam01881:cas6 Type: other Location: 142086-142823 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 142829-144706 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 144708-145622 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 145624-146325 bp Gene: COG1203:cas3 Type: Type-I Location: 146336-148657 bp Gene: pfam01930:cas4 Type: Type-I Location: 148672-149223 bp Gene: cd09722:cas1 Type: universal Location: 149226-150206 bp Gene: cd09725:cas2 Type: universal Location: 150209-150475 bp CRISPR array Location: 150659-151018 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 150659-151018 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 150659-151018 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUMO01000001.1 Clostridioides difficile strain VRECD0170 genome assembly, contig: ERS717045SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 619064 bp; # of CRISPR array = 2; # of cas gene = 8  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 99719-100604 bp 2 Locus 2: 272305-280161 bp 3 Locus 3: 353443-353537 bp 4 Locus 4: 510362-517822 bp Zoom in on locus 1 x14 Zoom in on locus 2 Zoom in on locus 3 x2 Zoom in on locus 4 CRISPR array Location: 99719-100604 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 99719-100604 bp Num of repeats: 14 Spacers: s1-s13 Gene: cd09641:cas3HD Type: Type-I Location: 272305-274713 bp Gene: cd09693:cas5 Type: Type-I Location: 274740-275537 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 275553-276566 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 276586-278052 bp Gene: pfam01881:cas6 Type: other Location: 278057-278794 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 279052-280161 bp CRISPR array Location: 353443-353537 bp Num of repeats: 2 Spacers: s14-s14 CRISPR array Location: 353443-353537 bp Num of repeats: 2 Spacers: s14-s14 Gene: mkCas0179:cas2 Type: universal Location: 510362-511627 bp Gene: pfam00078:RT Type: other Location: 516011-517822 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 99719-100604 bp]: array | spacers
           [Locus range 353443-353537 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUMO01000004.1 Clostridioides difficile strain VRECD0170 genome assembly, contig: ERS717045SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 477083 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 385923-386150 bp Zoom in on locus 1 x4 CRISPR array Location: 385923-386150 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 385923-386150 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 385923-386150 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FUMO01000002.1 Clostridioides difficile strain VRECD0170 genome assembly, contig: ERS717045SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 533777 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 280307-280661 bp 2 Locus 2: 326233-328103 bp Zoom in on locus 1 x6 Zoom in on locus 2 x29 CRISPR array Location: 280307-280661 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 280307-280661 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 326233-328103 bp Num of repeats: 29 Spacers: s6-s33 CRISPR array Location: 326233-328103 bp Num of repeats: 29 Spacers: s6-s33 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 280307-280661 bp]: array | spacers
           [Locus range 326233-328103 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: FUMO01000017.1 Clostridioides difficile strain VRECD0170 genome assembly, contig: ERS717045SCcontig000017, whole genome shotgun sequence

⇒Summary: seq-len = 54737 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 46234-47596 bp Zoom in on locus 1 x3 x8 CRISPR array Location: 46234-46395 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 46234-46395 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 47104-47596 bp Num of repeats: 8 Spacers: s3-s9 CRISPR array Location: 47104-47596 bp Num of repeats: 8 Spacers: s3-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 46234-46395 bp]: array | spacers
           [Locus range 47104-47596 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: FUMO01000008.1 Clostridioides difficile strain VRECD0170 genome assembly, contig: ERS717045SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 181162 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 57549-58368 bp Zoom in on locus 1 x13 CRISPR array Location: 57549-58368 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 57549-58368 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 57549-58368 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: FUMO01000015.1 Clostridioides difficile strain VRECD0170 genome assembly, contig: ERS717045SCcontig000015, whole genome shotgun sequence

⇒Summary: seq-len = 63360 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45160-45650 bp Zoom in on locus 1 x8 CRISPR array Location: 45160-45650 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 45160-45650 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 45160-45650 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)