CRISPRone

CRISPRone report for GCA_900164455.1_16780_8_57

♦ Seq 1: FUMP01000004.1 Clostridioides difficile strain VRECD0169 genome assembly, contig: ERS717044SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 387103 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252790-264465 bp Zoom in on locus 1 x33 CRISPR array Location: 252790-254927 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 252790-254927 bp Num of repeats: 33 Spacers: s1-s32 Gene: cd09725:cas2 Type: universal Location: 255111-255377 bp Gene: cd09722:cas1 Type: universal Location: 255380-256360 bp Gene: pfam01930:cas4 Type: Type-I Location: 256363-256881 bp Gene: COG1203:cas3 Type: Type-I Location: 256929-259250 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 259261-259962 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 259964-260878 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 260880-262730 bp Gene: pfam01881:cas6 Type: other Location: 262736-263530 bp Gene: pfam13280:WYL Type: other Location: 263551-264465 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252790-254927 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUMP01000002.1 Clostridioides difficile strain VRECD0169 genome assembly, contig: ERS717044SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 559305 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 21073-21167 bp 2 Locus 2: 205078-206366 bp 3 Locus 3: 316658-317481 bp 4 Locus 4: 499194-500734 bp Zoom in on locus 1 x2 Zoom in on locus 2 x20 Zoom in on locus 3 x13 Zoom in on locus 4 x24 CRISPR array Location: 21073-21167 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 21073-21167 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 205078-206366 bp Num of repeats: 20 Spacers: s2-s20 CRISPR array Location: 205078-206366 bp Num of repeats: 20 Spacers: s2-s20 CRISPR array Location: 316658-317481 bp Num of repeats: 13 Spacers: s21-s32 CRISPR array Location: 316658-317481 bp Num of repeats: 13 Spacers: s21-s32 CRISPR array Location: 499194-500734 bp Num of repeats: 24 Spacers: s33-s55 CRISPR array Location: 499194-500734 bp Num of repeats: 24 Spacers: s33-s55 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 21073-21167 bp]: array | spacers
           [Locus range 205078-206366 bp]: array | spacers
           [Locus range 316658-317481 bp]: array | spacers
           [Locus range 499194-500734 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUMP01000001.1 Clostridioides difficile strain VRECD0169 genome assembly, contig: ERS717044SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 809438 bp; # of CRISPR array = 2; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 275140-275234 bp 2 Locus 2: 639282-640033 bp 3 Locus 3: 802443-808941 bp Zoom in on locus 1 x2 Zoom in on locus 2 x12 Zoom in on locus 3 CRISPR array Location: 275140-275234 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 275140-275234 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 639282-640033 bp Num of repeats: 12 Spacers: s2-s12 CRISPR array Location: 639282-640033 bp Num of repeats: 12 Spacers: s2-s12 Gene: cd09641:cas3HD Type: Type-I Location: 802443-804851 bp Gene: cd09693:cas5 Type: Type-I Location: 804878-805675 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 805691-806704 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 806724-808199 bp Gene: pfam01881:cas6 Type: other Location: 808204-808941 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 275140-275234 bp]: array | spacers
           [Locus range 639282-640033 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUMP01000005.1 Clostridioides difficile strain VRECD0169 genome assembly, contig: ERS717044SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 346538 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 76497-77052 bp Zoom in on locus 1 x9 CRISPR array Location: 76497-77052 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 76497-77052 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 76497-77052 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)