CRISPRone

CRISPRone report for GCA_900164465.1_16780_8_60

♦ Seq 1: FULO01000003.1 Clostridioides difficile strain VRECD0173 genome assembly, contig: ERS717047SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 473246 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90901-91257 bp Zoom in on locus 1 x6 CRISPR array Location: 90901-91257 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 90901-91257 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90901-91257 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FULO01000004.1 Clostridioides difficile strain VRECD0173 genome assembly, contig: ERS717047SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 394663 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 107249-107342 bp Zoom in on locus 1 x2 CRISPR array Location: 107249-107342 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 107249-107342 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 107249-107342 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FULO01000001.1 Clostridioides difficile strain VRECD0173 genome assembly, contig: ERS717047SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1334704 bp; # of CRISPR array = 5; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19075-19501 bp 2 Locus 2: 196570-197586 bp 3 Locus 3: 498764-498989 bp 4 Locus 4: 847089-847775 bp 5 Locus 5: 1009732-1018174 bp 6 Locus 6: 1091456-1091550 bp Zoom in on locus 1 x7 Zoom in on locus 2 x16 Zoom in on locus 3 x4 Zoom in on locus 4 x11 Zoom in on locus 5 Zoom in on locus 6 x2 CRISPR array Location: 19075-19501 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 19075-19501 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 196570-197586 bp Num of repeats: 16 Spacers: s7-s21 CRISPR array Location: 196570-197586 bp Num of repeats: 16 Spacers: s7-s21 CRISPR array Location: 498764-498989 bp Num of repeats: 4 Spacers: s22-s24 CRISPR array Location: 498764-498989 bp Num of repeats: 4 Spacers: s22-s24 CRISPR array Location: 847089-847775 bp Num of repeats: 11 Spacers: s25-s34 CRISPR array Location: 847089-847775 bp Num of repeats: 11 Spacers: s25-s34 Gene: cd09641:cas3HD Type: Type-I Location: 1009732-1012140 bp Gene: cd09693:cas5 Type: Type-I Location: 1012167-1012964 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1012980-1013993 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 1014013-1015488 bp Gene: pfam01881:cas6 Type: other Location: 1015493-1016230 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 1017065-1018174 bp CRISPR array Location: 1091456-1091550 bp Num of repeats: 2 Spacers: s35-s35 CRISPR array Location: 1091456-1091550 bp Num of repeats: 2 Spacers: s35-s35 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 19075-19501 bp]: array | spacers
           [Locus range 196570-197586 bp]: array | spacers
           [Locus range 498764-498989 bp]: array | spacers
           [Locus range 847089-847775 bp]: array | spacers
           [Locus range 1091456-1091550 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FULO01000005.1 Clostridioides difficile strain VRECD0173 genome assembly, contig: ERS717047SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 275256 bp; # of CRISPR array = 3; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 42868-45383 bp 2 Locus 2: 100901-111403 bp Zoom in on locus 1 x6 x8 Zoom in on locus 2 x14 CRISPR array Location: 42868-43226 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 42868-43226 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 44893-45383 bp Num of repeats: 8 Spacers: s6-s12 CRISPR array Location: 44893-45383 bp Num of repeats: 8 Spacers: s6-s12 CRISPR array Location: 100901-101784 bp Num of repeats: 14 Spacers: s13-s25 CRISPR array Location: 100901-101784 bp Num of repeats: 14 Spacers: s13-s25 Gene: cd09725:cas2 Type: universal Location: 101968-102234 bp Gene: cd09722:cas1 Type: universal Location: 102237-103217 bp Gene: pfam01930:cas4 Type: Type-I Location: 103220-103738 bp Gene: cd09641:cas3HD Type: Type-I Location: 103786-106107 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 106118-106819 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 106821-107735 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 107737-109614 bp Gene: pfam01881:cas6 Type: other Location: 109620-110414 bp Gene: pfam13280:WYL Type: other Location: 110435-111403 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 42868-43226 bp]: array | spacers
           [Locus range 44893-45383 bp]: array | spacers
           [Locus range 100901-101784 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)