CRISPRone

CRISPRone report for GCA_900164485.1_16780_8_59

♦ Seq 1: FUMX01000004.1 Clostridioides difficile strain VRECD0172 genome assembly, contig: ERS717046SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 444859 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252290-262213 bp Zoom in on locus 1 x6 CRISPR array Location: 252290-252648 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 252290-252648 bp Num of repeats: 6 Spacers: s1-s5 Gene: cd09725:cas2 Type: universal Location: 252832-253098 bp Gene: cd09722:cas1 Type: universal Location: 253101-254081 bp Gene: pfam01930:cas4 Type: Type-I Location: 254084-254602 bp Gene: COG1203:cas3 Type: Type-I Location: 254650-256971 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 256982-257683 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 257685-258599 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 258601-260478 bp Gene: pfam01881:cas6 Type: other Location: 260484-261278 bp Gene: pfam13280:WYL Type: other Location: 261299-262213 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252290-252648 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUMX01000001.1 Clostridioides difficile strain VRECD0172 genome assembly, contig: ERS717046SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1181422 bp; # of CRISPR array = 4; # of cas gene = 8  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 305606-305960 bp 2 Locus 2: 351532-353402 bp 3 Locus 3: 658745-659630 bp 4 Locus 4: 831331-839187 bp 5 Locus 5: 912469-912563 bp 6 Locus 6: 1069388-1076848 bp Zoom in on locus 1 x6 Zoom in on locus 2 x29 Zoom in on locus 3 x14 Zoom in on locus 4 Zoom in on locus 5 x2 Zoom in on locus 6 CRISPR array Location: 305606-305960 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 305606-305960 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 351532-353402 bp Num of repeats: 29 Spacers: s6-s33 CRISPR array Location: 351532-353402 bp Num of repeats: 29 Spacers: s6-s33 CRISPR array Location: 658745-659630 bp Num of repeats: 14 Spacers: s34-s46 CRISPR array Location: 658745-659630 bp Num of repeats: 14 Spacers: s34-s46 Gene: cd09641:cas3HD Type: Type-I Location: 831331-833739 bp Gene: cd09693:cas5 Type: Type-I Location: 833766-834563 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 834579-835592 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 835612-837078 bp Gene: pfam01881:cas6 Type: other Location: 837083-837820 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 838078-839187 bp CRISPR array Location: 912469-912563 bp Num of repeats: 2 Spacers: s47-s47 CRISPR array Location: 912469-912563 bp Num of repeats: 2 Spacers: s47-s47 Gene: mkCas0179:cas2 Type: universal Location: 1069388-1070653 bp Gene: pfam00078:RT Type: other Location: 1075037-1076848 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 305606-305960 bp]: array | spacers
           [Locus range 351532-353402 bp]: array | spacers
           [Locus range 658745-659630 bp]: array | spacers
           [Locus range 912469-912563 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUMX01000006.1 Clostridioides difficile strain VRECD0172 genome assembly, contig: ERS717046SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 181808 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 123474-124294 bp Zoom in on locus 1 x13 CRISPR array Location: 123474-124294 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 123474-124294 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 123474-124294 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUMX01000013.1 Clostridioides difficile strain VRECD0172 genome assembly, contig: ERS717046SCcontig000013, whole genome shotgun sequence

⇒Summary: seq-len = 92930 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 60902-68183 bp Zoom in on locus 1 x17 CRISPR array Location: 60902-61980 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 60902-61980 bp Num of repeats: 17 Spacers: s1-s16 Gene: COG1203:cas3 Type: Type-I Location: 62547-64529 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 64540-65610 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 65631-66779 bp Gene: pfam01881:cas6 Type: other Location: 66781-67545 bp Gene: cd09693:cas5 Type: Type-I Location: 67536-68183 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 60902-61980 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUMX01000012.1 Clostridioides difficile strain VRECD0172 genome assembly, contig: ERS717046SCcontig000012, whole genome shotgun sequence

⇒Summary: seq-len = 95209 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 86637-89592 bp Zoom in on locus 1 x13 x4 x2 CRISPR array Location: 86637-87452 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 86637-87452 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 89127-89353 bp Num of repeats: 4 Spacers: s13-s15 CRISPR array Location: 89127-89353 bp Num of repeats: 4 Spacers: s13-s15 CRISPR array Location: 89497-89592 bp Num of repeats: 2 Spacers: s16-s16 CRISPR array Location: 89497-89592 bp Num of repeats: 2 Spacers: s16-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 86637-87452 bp]: array | spacers
           [Locus range 89127-89353 bp]: array | spacers
           [Locus range 89497-89592 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FUMX01000003.1 Clostridioides difficile strain VRECD0172 genome assembly, contig: ERS717046SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 477112 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 385923-386150 bp Zoom in on locus 1 x4 CRISPR array Location: 385923-386150 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 385923-386150 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 385923-386150 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: FUMX01000010.1 Clostridioides difficile strain VRECD0172 genome assembly, contig: ERS717046SCcontig000010, whole genome shotgun sequence

⇒Summary: seq-len = 118242 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17737-18228 bp 2 Locus 2: 109742-111104 bp Zoom in on locus 1 x8 Zoom in on locus 2 x3 x8 CRISPR array Location: 17737-18228 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 17737-18228 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 109742-109903 bp Num of repeats: 3 Spacers: s8-s9 CRISPR array Location: 109742-109903 bp Num of repeats: 3 Spacers: s8-s9 CRISPR array Location: 110612-111104 bp Num of repeats: 8 Spacers: s10-s16 CRISPR array Location: 110612-111104 bp Num of repeats: 8 Spacers: s10-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17737-18228 bp]: array | spacers
           [Locus range 109742-109903 bp]: array | spacers
           [Locus range 110612-111104 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)