CRISPRone

CRISPRone report for GCA_900164495.1_16780_8_54

♦ Seq 1: FUMG01000003.1 Clostridioides difficile strain VRECD0166 genome assembly, contig: ERS717041SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 505747 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 172454-173008 bp 2 Locus 2: 501353-501776 bp Zoom in on locus 1 x9 Zoom in on locus 2 x7 CRISPR array Location: 172454-173008 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 172454-173008 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 501353-501776 bp Num of repeats: 7 Spacers: s9-s14 CRISPR array Location: 501353-501776 bp Num of repeats: 7 Spacers: s9-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 172454-173008 bp]: array | spacers
           [Locus range 501353-501776 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUMG01000001.1 Clostridioides difficile strain VRECD0166 genome assembly, contig: ERS717041SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 931579 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11927-12351 bp 2 Locus 2: 360874-361359 bp 3 Locus 3: 581775-590096 bp 4 Locus 4: 663376-663469 bp Zoom in on locus 1 x7 Zoom in on locus 2 x8 Zoom in on locus 3 Zoom in on locus 4 x2 CRISPR array Location: 11927-12351 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 11927-12351 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 360874-361359 bp Num of repeats: 8 Spacers: s7-s13 CRISPR array Location: 360874-361359 bp Num of repeats: 8 Spacers: s7-s13 Gene: cd09641:cas3HD Type: Type-I Location: 581775-584183 bp Gene: cd09693:cas5 Type: Type-I Location: 584210-585007 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 585023-586039 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 586059-587534 bp Gene: pfam01881:cas6 Type: other Location: 587539-588276 bp Gene: unk Type: unknown Location: 588377-588553 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 588987-590096 bp CRISPR array Location: 663376-663469 bp Num of repeats: 2 Spacers: s14-s14 CRISPR array Location: 663376-663469 bp Num of repeats: 2 Spacers: s14-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 11927-12351 bp]: array | spacers
           [Locus range 360874-361359 bp]: array | spacers
           [Locus range 663376-663469 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUMG01000004.1 Clostridioides difficile strain VRECD0166 genome assembly, contig: ERS717041SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 409792 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 283498-284253 bp Zoom in on locus 1 x12 CRISPR array Location: 283498-284253 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 283498-284253 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 283498-284253 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUMG01000002.1 Clostridioides difficile strain VRECD0166 genome assembly, contig: ERS717041SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 869325 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 288795-299992 bp 2 Locus 2: 513860-513953 bp Zoom in on locus 1 x26 Zoom in on locus 2 x2 CRISPR array Location: 288795-290454 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 288795-290454 bp Num of repeats: 26 Spacers: s1-s25 Gene: cd09725:cas2 Type: universal Location: 290638-290904 bp Gene: cd09722:cas1 Type: universal Location: 290907-291887 bp Gene: pfam01930:cas4 Type: Type-I Location: 291890-292408 bp Gene: cd09641:cas3HD Type: Type-I Location: 292456-294777 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 294788-295489 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 295491-296405 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 296407-298257 bp Gene: pfam01881:cas6 Type: other Location: 298263-299057 bp Gene: pfam13280:WYL Type: other Location: 299078-299992 bp CRISPR array Location: 513860-513953 bp Num of repeats: 2 Spacers: s26-s26 CRISPR array Location: 513860-513953 bp Num of repeats: 2 Spacers: s26-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 288795-290454 bp]: array | spacers
           [Locus range 513860-513953 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)