CRISPRone

CRISPRone report for GCA_900164515.1_16780_8_69

♦ Seq 1: FUNA01000003.1 Clostridioides difficile strain VRECD0085 genome assembly, contig: ERS717056SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 390775 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29029-29453 bp 2 Locus 2: 138707-139394 bp 3 Locus 3: 319394-319953 bp Zoom in on locus 1 x7 Zoom in on locus 2 x11 Zoom in on locus 3 x9 CRISPR array Location: 29029-29453 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 29029-29453 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 138707-139394 bp Num of repeats: 11 Spacers: s7-s16 CRISPR array Location: 138707-139394 bp Num of repeats: 11 Spacers: s7-s16 CRISPR array Location: 319394-319953 bp Num of repeats: 9 Spacers: s17-s24 CRISPR array Location: 319394-319953 bp Num of repeats: 9 Spacers: s17-s24 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 29029-29453 bp]: array | spacers
           [Locus range 138707-139394 bp]: array | spacers
           [Locus range 319394-319953 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUNA01000001.1 Clostridioides difficile strain VRECD0085 genome assembly, contig: ERS717056SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 858252 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 114181-114606 bp 2 Locus 2: 194436-204158 bp 3 Locus 3: 255367-266325 bp Zoom in on locus 1 x7 Zoom in on locus 2 Zoom in on locus 3 CRISPR array Location: 114181-114606 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 114181-114606 bp Num of repeats: 7 Spacers: s1-s6 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 194436-195545 bp Gene: cas14:cas14 Type: Type-V Location: 195698-196870 bp Gene: unk Type: unknown Location: 196898-197356 bp Gene: pfam01881:cas6 Type: other Location: 197670-198407 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 198412-199878 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 199897-200910 bp Gene: cd09693:cas5 Type: Type-I Location: 200926-201723 bp Gene: cd09641:cas3HD Type: Type-I Location: 201750-204158 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 255367-255852 bp Gene: cd06127:DEDDh Type: Type-I Location: 262673-263701 bp Gene: unk Type: unknown Location: 264073-264579 bp Gene: unk Type: unknown Location: 264992-265660 bp Gene: cd06127:DEDDh Type: Type-I Location: 265819-266325 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 114181-114606 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUNA01000002.1 Clostridioides difficile strain VRECD0085 genome assembly, contig: ERS717056SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 469564 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 275529-276084 bp Zoom in on locus 1 x9 CRISPR array Location: 275529-276084 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 275529-276084 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 275529-276084 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)