CRISPRone

CRISPRone report for GCA_900164525.1_16780_8_76

♦ Seq 1: FUNB01000029.1 Clostridioides difficile strain VRECD0122 genome assembly, contig: ERS717063SCcontig000029, whole genome shotgun sequence

⇒Summary: seq-len = 14540 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5160-5716 bp Zoom in on locus 1 x9 CRISPR array Location: 5160-5716 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 5160-5716 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5160-5716 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUNB01000028.1 Clostridioides difficile strain VRECD0122 genome assembly, contig: ERS717063SCcontig000028, whole genome shotgun sequence

⇒Summary: seq-len = 16979 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9124-12588 bp Zoom in on locus 1 x6 x9 x5 CRISPR array Location: 9124-9486 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 9124-9486 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 10088-10645 bp Num of repeats: 9 Spacers: s6-s13 CRISPR array Location: 10088-10645 bp Num of repeats: 9 Spacers: s6-s13 CRISPR array Location: 12298-12588 bp Num of repeats: 5 Spacers: s14-s17 CRISPR array Location: 12298-12588 bp Num of repeats: 5 Spacers: s14-s17 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 9124-9486 bp]: array | spacers
           [Locus range 10088-10645 bp]: array | spacers
           [Locus range 12298-12588 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUNB01000004.1 Clostridioides difficile strain VRECD0122 genome assembly, contig: ERS717063SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 219274 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 79824-80510 bp 2 Locus 2: 189856-190279 bp Zoom in on locus 1 x11 Zoom in on locus 2 x7 CRISPR array Location: 79824-80510 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 79824-80510 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 189856-190279 bp Num of repeats: 7 Spacers: s11-s16 CRISPR array Location: 189856-190279 bp Num of repeats: 7 Spacers: s11-s16 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 79824-80510 bp]: array | spacers
           [Locus range 189856-190279 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUNB01000007.1 Clostridioides difficile strain VRECD0122 genome assembly, contig: ERS717063SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 179488 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 53052-53610 bp Zoom in on locus 1 x9 CRISPR array Location: 53052-53610 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 53052-53610 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 53052-53610 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUNB01000001.1 Clostridioides difficile strain VRECD0122 genome assembly, contig: ERS717063SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 799540 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 46041-46399 bp 2 Locus 2: 126209-135931 bp 3 Locus 3: 187140-198098 bp Zoom in on locus 1 x6 Zoom in on locus 2 Zoom in on locus 3 CRISPR array Location: 46041-46399 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 46041-46399 bp Num of repeats: 6 Spacers: s1-s5 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 126209-127318 bp Gene: cas14:cas14 Type: Type-V Location: 127471-128643 bp Gene: unk Type: unknown Location: 128671-129129 bp Gene: pfam01881:cas6 Type: other Location: 129443-130180 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 130185-131651 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 131670-132683 bp Gene: cd09693:cas5 Type: Type-I Location: 132699-133496 bp Gene: cd09641:cas3HD Type: Type-I Location: 133523-135931 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 187140-187625 bp Gene: cd06127:DEDDh Type: Type-I Location: 194446-195474 bp Gene: unk Type: unknown Location: 195846-196352 bp Gene: unk Type: unknown Location: 196765-197433 bp Gene: cd06127:DEDDh Type: Type-I Location: 197592-198098 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 46041-46399 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)