CRISPRone

CRISPRone report for GCA_900164545.1_16780_8_80

♦ Seq 1: FUND01000011.1 Clostridioides difficile strain VRECD0174 genome assembly, contig: ERS717067SCcontig000011, whole genome shotgun sequence

⇒Summary: seq-len = 79941 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38547-38641 bp Zoom in on locus 1 x2 CRISPR array Location: 38547-38641 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 38547-38641 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38547-38641 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUND01000001.1 Clostridioides difficile strain VRECD0174 genome assembly, contig: ERS717067SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1035374 bp; # of CRISPR array = 3; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12230-12456 bp 2 Locus 2: 447877-458849 bp 3 Locus 3: 510049-519781 bp 4 Locus 4: 596988-597214 bp 5 Locus 5: 921116-921872 bp Zoom in on locus 1 x4 Zoom in on locus 2 Zoom in on locus 3 Zoom in on locus 4 x4 Zoom in on locus 5 x12 CRISPR array Location: 12230-12456 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 12230-12456 bp Num of repeats: 4 Spacers: s1-s3 Gene: cd06127:DEDDh Type: Type-I Location: 447877-448383 bp Gene: unk Type: unknown Location: 448542-449210 bp Gene: unk Type: unknown Location: 449623-450129 bp Gene: cd06127:DEDDh Type: Type-I Location: 450500-451537 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 458364-458849 bp Gene: cd09641:cas3HD Type: Type-I Location: 510049-512457 bp Gene: cd09693:cas5 Type: Type-I Location: 512484-513281 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 513297-514310 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 514329-515804 bp Gene: pfam01881:cas6 Type: other Location: 515809-516546 bp Gene: unk Type: unknown Location: 516860-517078 bp Gene: unk Type: unknown Location: 517104-517319 bp Gene: cas14:cas14 Type: Type-V Location: 517347-518519 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 518672-519781 bp CRISPR array Location: 596988-597214 bp Num of repeats: 4 Spacers: s4-s6 CRISPR array Location: 596988-597214 bp Num of repeats: 4 Spacers: s4-s6 CRISPR array Location: 921116-921872 bp Num of repeats: 12 Spacers: s7-s17 CRISPR array Location: 921116-921872 bp Num of repeats: 12 Spacers: s7-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 12230-12456 bp]: array | spacers
           [Locus range 596988-597214 bp]: array | spacers
           [Locus range 921116-921872 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUND01000002.1 Clostridioides difficile strain VRECD0174 genome assembly, contig: ERS717067SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 767650 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 265164-276104 bp Zoom in on locus 1 x22 CRISPR array Location: 265164-266566 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 265164-266566 bp Num of repeats: 22 Spacers: s1-s21 Gene: cd09725:cas2 Type: universal Location: 266750-267016 bp Gene: cd09722:cas1 Type: universal Location: 267019-267999 bp Gene: pfam01930:cas4 Type: Type-I Location: 268002-268520 bp Gene: cd09641:cas3HD Type: Type-I Location: 268568-270889 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 270900-271601 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 271603-272517 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 272519-274369 bp Gene: pfam01881:cas6 Type: other Location: 274375-275169 bp Gene: pfam13280:WYL Type: other Location: 275190-276104 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 265164-266566 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUND01000015.1 Clostridioides difficile strain VRECD0174 genome assembly, contig: ERS717067SCcontig000015, whole genome shotgun sequence

⇒Summary: seq-len = 48922 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44472-44634 bp Zoom in on locus 1 x3 CRISPR array Location: 44472-44634 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 44472-44634 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 44472-44634 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUND01000003.1 Clostridioides difficile strain VRECD0174 genome assembly, contig: ERS717067SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 630000 bp; # of CRISPR array = 5; # of cas gene = 3  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 398154-398576 bp 2 Locus 2: 410299-415301 bp 3 Locus 3: 508500-509055 bp 4 Locus 4: 614462-618475 bp Zoom in on locus 1 x7 Zoom in on locus 2 Zoom in on locus 3 x9 Zoom in on locus 4 x3 x7 x3 CRISPR array Location: 398154-398576 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 398154-398576 bp Num of repeats: 7 Spacers: s1-s6 Gene: cd06127:DEDDh Type: Type-I Location: 410299-412356 bp Gene: cas14:cas14 Type: Type-V Location: 413002-414120 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 414267-415301 bp CRISPR array Location: 508500-509055 bp Num of repeats: 9 Spacers: s7-s14 CRISPR array Location: 508500-509055 bp Num of repeats: 9 Spacers: s7-s14 CRISPR array Location: 614462-614622 bp Num of repeats: 3 Spacers: s15-s16 CRISPR array Location: 614462-614622 bp Num of repeats: 3 Spacers: s15-s16 CRISPR array Location: 615224-615650 bp Num of repeats: 7 Spacers: s17-s22 CRISPR array Location: 615224-615650 bp Num of repeats: 7 Spacers: s17-s22 CRISPR array Location: 618314-618475 bp Num of repeats: 3 Spacers: s23-s24 CRISPR array Location: 618314-618475 bp Num of repeats: 3 Spacers: s23-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 398154-398576 bp]: array | spacers
           [Locus range 508500-509055 bp]: array | spacers
           [Locus range 614462-614622 bp]: array | spacers
           [Locus range 615224-615650 bp]: array | spacers
           [Locus range 618314-618475 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)