CRISPRone

CRISPRone report for GCA_900164555.1_16852_2_1

♦ Seq 1: FUNE01000015.1 Clostridioides difficile strain VRECD0003 genome assembly, contig: ERS716894SCcontig000015, whole genome shotgun sequence

⇒Summary: seq-len = 66713 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63075-64223 bp Zoom in on locus 1 x18 CRISPR array Location: 63075-64223 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 63075-64223 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63075-64223 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUNE01000001.1 Clostridioides difficile strain VRECD0003 genome assembly, contig: ERS716894SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 688502 bp; # of CRISPR array = 0; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 527569-538522 bp 2 Locus 2: 591125-599452 bp Zoom in on locus 1 Zoom in on locus 2 Gene: cd06127:DEDDh Type: Type-I Location: 527569-528075 bp Gene: unk Type: unknown Location: 528234-528902 bp Gene: unk Type: unknown Location: 529315-529821 bp Gene: cd06127:DEDDh Type: Type-I Location: 530185-531222 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 538037-538522 bp Gene: cd09641:cas3HD Type: Type-I Location: 591125-593533 bp Gene: cd09693:cas5 Type: Type-I Location: 593560-594357 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 594373-595386 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 595405-596871 bp Gene: pfam01881:cas6 Type: other Location: 596876-597613 bp Gene: unk Type: unknown Location: 597714-597890 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 598343-599452 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUNE01000002.1 Clostridioides difficile strain VRECD0003 genome assembly, contig: ERS716894SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 673229 bp; # of CRISPR array = 3; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 67475-79062 bp 2 Locus 2: 187051-187865 bp 3 Locus 3: 225367-237678 bp Zoom in on locus 1 x39 Zoom in on locus 2 x13 Zoom in on locus 3 x44 Gene: cd09652:cas6 Type: other Location: 67475-68170 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 68182-69921 bp Gene: pfam05107:cas7b Type: Type-I Location: 69914-70903 bp Gene: cd09693:cas5 Type: Type-I Location: 70905-71645 bp Gene: cd09641:cas3HD Type: Type-I Location: 71669-74227 bp CRISPR array Location: 74417-76950 bp Num of repeats: 39 Spacers: s1-s38 CRISPR array Location: 74417-76950 bp Num of repeats: 39 Spacers: s1-s38 Gene: pfam01930:cas4 Type: Type-I Location: 77034-77528 bp Gene: cd09722:cas1 Type: universal Location: 77554-78561 bp Gene: cd09725:cas2 Type: universal Location: 78772-79062 bp CRISPR array Location: 187051-187865 bp Num of repeats: 13 Spacers: s39-s50 CRISPR array Location: 187051-187865 bp Num of repeats: 13 Spacers: s39-s50 Gene: COG0640:csa3 Type: Subtype-I-A Location: 225367-225744 bp Gene: cd09718:cas1 Type: universal Location: 225756-227411 bp CRISPR array Location: 234813-237678 bp Num of repeats: 44 Spacers: s51-s93 CRISPR array Location: 234813-237678 bp Num of repeats: 44 Spacers: s51-s93 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 74417-76950 bp]: array | spacers
           [Locus range 187051-187865 bp]: array | spacers
           [Locus range 234813-237678 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUNE01000003.1 Clostridioides difficile strain VRECD0003 genome assembly, contig: ERS716894SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 298882 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 104975-105601 bp Zoom in on locus 1 x10 CRISPR array Location: 104975-105601 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 104975-105601 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 104975-105601 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUNE01000010.1 Clostridioides difficile strain VRECD0003 genome assembly, contig: ERS716894SCcontig000010, whole genome shotgun sequence

⇒Summary: seq-len = 147315 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9889-21523 bp Zoom in on locus 1 x32 Gene: pfam13280:WYL Type: other Location: 9889-10842 bp Gene: pfam01881:cas6 Type: other Location: 10920-11657 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 11663-13513 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 13515-14429 bp Gene: cd09693:cas5 Type: Type-I Location: 14431-15132 bp Gene: COG1203:cas3 Type: Type-I Location: 15143-17464 bp Gene: pfam01930:cas4 Type: Type-I Location: 17479-18030 bp Gene: cd09722:cas1 Type: universal Location: 18033-19013 bp Gene: cd09725:cas2 Type: universal Location: 19016-19282 bp CRISPR array Location: 19466-21523 bp Num of repeats: 32 Spacers: s1-s31 CRISPR array Location: 19466-21523 bp Num of repeats: 32 Spacers: s1-s31 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 19466-21523 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)