CRISPRone

CRISPRone report for GCA_900164565.1_16780_8_94

♦ Seq 1: FUNF01000006.1 Clostridioides difficile strain VRECD0179 genome assembly, contig: ERS717081SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 252392 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 56662-58007 bp 2 Locus 2: 232664-233351 bp Zoom in on locus 1 x21 Zoom in on locus 2 x11 CRISPR array Location: 56662-58007 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 56662-58007 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 232664-233351 bp Num of repeats: 11 Spacers: s21-s30 CRISPR array Location: 232664-233351 bp Num of repeats: 11 Spacers: s21-s30 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 56662-58007 bp]: array | spacers
           [Locus range 232664-233351 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUNF01000005.1 Clostridioides difficile strain VRECD0179 genome assembly, contig: ERS717081SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 294018 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252117-252345 bp Zoom in on locus 1 x4 CRISPR array Location: 252117-252345 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 252117-252345 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 252117-252345 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUNF01000001.1 Clostridioides difficile strain VRECD0179 genome assembly, contig: ERS717081SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 820320 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 247962-248057 bp 2 Locus 2: 321337-329202 bp 3 Locus 3: 491622-492048 bp 4 Locus 4: 795745-797418 bp Zoom in on locus 1 x2 Zoom in on locus 2 Zoom in on locus 3 x7 Zoom in on locus 4 x26 CRISPR array Location: 247962-248057 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 247962-248057 bp Num of repeats: 2 Spacers: s1-s1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 321337-322446 bp Gene: pfam01881:cas6 Type: other Location: 322704-323441 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 323446-324921 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 324941-325954 bp Gene: cd09693:cas5 Type: Type-I Location: 325970-326767 bp Gene: cd09641:cas3HD Type: Type-I Location: 326794-329202 bp CRISPR array Location: 491622-492048 bp Num of repeats: 7 Spacers: s2-s7 CRISPR array Location: 491622-492048 bp Num of repeats: 7 Spacers: s2-s7 CRISPR array Location: 795745-797418 bp Num of repeats: 26 Spacers: s8-s32 CRISPR array Location: 795745-797418 bp Num of repeats: 26 Spacers: s8-s32 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 247962-248057 bp]: array | spacers
           [Locus range 491622-492048 bp]: array | spacers
           [Locus range 795745-797418 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUNF01000020.1 Clostridioides difficile strain VRECD0179 genome assembly, contig: ERS717081SCcontig000020, whole genome shotgun sequence

⇒Summary: seq-len = 29429 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8721-10905 bp Zoom in on locus 1 x3 x4 CRISPR array Location: 8721-8880 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 8721-8880 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 10681-10905 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 10681-10905 bp Num of repeats: 4 Spacers: s3-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8721-8880 bp]: array | spacers
           [Locus range 10681-10905 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUNF01000004.1 Clostridioides difficile strain VRECD0179 genome assembly, contig: ERS717081SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 428504 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252384-262629 bp Zoom in on locus 1 x11 CRISPR array Location: 252384-253064 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 252384-253064 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09725:cas2 Type: universal Location: 253248-253514 bp Gene: cd09722:cas1 Type: universal Location: 253517-254497 bp Gene: pfam01930:cas4 Type: Type-I Location: 254500-255018 bp Gene: COG1203:cas3 Type: Type-I Location: 255066-257387 bp Gene: cd09693:cas5 Type: Type-I Location: 257398-258099 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 258101-259015 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 259017-260894 bp Gene: pfam01881:cas6 Type: other Location: 260900-261637 bp Gene: pfam13280:WYL Type: other Location: 261715-262629 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252384-253064 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FUNF01000002.1 Clostridioides difficile strain VRECD0179 genome assembly, contig: ERS717081SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 490855 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 94288-94711 bp 2 Locus 2: 300260-300422 bp Zoom in on locus 1 x7 Zoom in on locus 2 x3 CRISPR array Location: 94288-94711 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 94288-94711 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 300260-300422 bp Num of repeats: 3 Spacers: s7-s8 CRISPR array Location: 300260-300422 bp Num of repeats: 3 Spacers: s7-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 94288-94711 bp]: array | spacers
           [Locus range 300260-300422 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)