CRISPRone

CRISPRone report for GCA_900164585.1_16852_2_3

♦ Seq 1: FUNH01000001.1 Clostridioides difficile strain VRECD0012 genome assembly, contig: ERS716896SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1146335 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 274208-274368 bp 2 Locus 2: 655526-656142 bp 3 Locus 3: 819414-827735 bp 4 Locus 4: 901018-901375 bp Zoom in on locus 1 x3 Zoom in on locus 2 x10 Zoom in on locus 3 Zoom in on locus 4 x6 CRISPR array Location: 274208-274368 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 274208-274368 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 655526-656142 bp Num of repeats: 10 Spacers: s3-s11 CRISPR array Location: 655526-656142 bp Num of repeats: 10 Spacers: s3-s11 Gene: cd09641:cas3HD Type: Type-I Location: 819414-821822 bp Gene: cd09693:cas5 Type: Type-I Location: 821849-822646 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 822662-823678 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 823698-825173 bp Gene: pfam01881:cas6 Type: other Location: 825178-825915 bp Gene: unk Type: unknown Location: 826016-826192 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 826626-827735 bp CRISPR array Location: 901018-901375 bp Num of repeats: 6 Spacers: s12-s16 CRISPR array Location: 901018-901375 bp Num of repeats: 6 Spacers: s12-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 274208-274368 bp]: array | spacers
           [Locus range 655526-656142 bp]: array | spacers
           [Locus range 901018-901375 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUNH01000002.1 Clostridioides difficile strain VRECD0012 genome assembly, contig: ERS716896SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 814900 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 328607-328701 bp 2 Locus 2: 550967-562078 bp Zoom in on locus 1 x2 Zoom in on locus 2 x25 CRISPR array Location: 328607-328701 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 328607-328701 bp Num of repeats: 2 Spacers: s1-s1 Gene: pfam13280:WYL Type: other Location: 550967-551854 bp Gene: pfam01881:cas6 Type: other Location: 551932-552669 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 552675-554525 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 554527-555441 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 555443-556144 bp Gene: COG1203:cas3 Type: Type-I Location: 556155-558476 bp Gene: pfam01930:cas4 Type: Type-I Location: 558491-559042 bp Gene: cd09722:cas1 Type: universal Location: 559045-560025 bp Gene: cd09725:cas2 Type: universal Location: 560028-560294 bp CRISPR array Location: 560478-562078 bp Num of repeats: 25 Spacers: s2-s25 CRISPR array Location: 560478-562078 bp Num of repeats: 25 Spacers: s2-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 328607-328701 bp]: array | spacers
           [Locus range 560478-562078 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUNH01000004.1 Clostridioides difficile strain VRECD0012 genome assembly, contig: ERS716896SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 508464 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3720-4804 bp 2 Locus 2: 194142-194701 bp 3 Locus 3: 334017-334774 bp Zoom in on locus 1 x17 Zoom in on locus 2 x9 Zoom in on locus 3 x12 CRISPR array Location: 3720-4804 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 3720-4804 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 194142-194701 bp Num of repeats: 9 Spacers: s17-s24 CRISPR array Location: 194142-194701 bp Num of repeats: 9 Spacers: s17-s24 CRISPR array Location: 334017-334774 bp Num of repeats: 12 Spacers: s25-s35 CRISPR array Location: 334017-334774 bp Num of repeats: 12 Spacers: s25-s35 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3720-4804 bp]: array | spacers
           [Locus range 194142-194701 bp]: array | spacers
           [Locus range 334017-334774 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUNH01000005.1 Clostridioides difficile strain VRECD0012 genome assembly, contig: ERS716896SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 334242 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 85042-89600 bp 2 Locus 2: 247421-248175 bp Zoom in on locus 1 x5 x4 x8 Zoom in on locus 2 x12 CRISPR array Location: 85042-85334 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 85042-85334 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 87017-87243 bp Num of repeats: 4 Spacers: s5-s7 CRISPR array Location: 87017-87243 bp Num of repeats: 4 Spacers: s5-s7 CRISPR array Location: 89105-89600 bp Num of repeats: 8 Spacers: s8-s14 CRISPR array Location: 89105-89600 bp Num of repeats: 8 Spacers: s8-s14 CRISPR array Location: 247421-248175 bp Num of repeats: 12 Spacers: s15-s25 CRISPR array Location: 247421-248175 bp Num of repeats: 12 Spacers: s15-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 85042-85334 bp]: array | spacers
           [Locus range 87017-87243 bp]: array | spacers
           [Locus range 89105-89600 bp]: array | spacers
           [Locus range 247421-248175 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)