CRISPRone

CRISPRone report for GCA_900164595.1_16852_2_4

♦ Seq 1: FUNK01000013.1 Clostridioides difficile strain VRECD0013 genome assembly, contig: ERS716897SCcontig000013, whole genome shotgun sequence

⇒Summary: seq-len = 52981 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 32649-32742 bp Zoom in on locus 1 x2 CRISPR array Location: 32649-32742 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 32649-32742 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 32649-32742 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUNK01000001.1 Clostridioides difficile strain VRECD0013 genome assembly, contig: ERS716897SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1357716 bp; # of CRISPR array = 6; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 240421-240978 bp 2 Locus 2: 315198-323063 bp 3 Locus 3: 488820-489047 bp 4 Locus 4: 830566-830792 bp 5 Locus 5: 1178055-1179794 bp 6 Locus 6: 1331799-1333773 bp Zoom in on locus 1 x9 Zoom in on locus 2 Zoom in on locus 3 x4 Zoom in on locus 4 x4 Zoom in on locus 5 x27 Zoom in on locus 6 x13 x9 CRISPR array Location: 240421-240978 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 240421-240978 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 315198-316307 bp Gene: pfam01881:cas6 Type: other Location: 316565-317302 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 317307-318782 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 318802-319815 bp Gene: cd09693:cas5 Type: Type-I Location: 319831-320628 bp Gene: cd09641:cas3HD Type: Type-I Location: 320655-323063 bp CRISPR array Location: 488820-489047 bp Num of repeats: 4 Spacers: s9-s11 CRISPR array Location: 488820-489047 bp Num of repeats: 4 Spacers: s9-s11 CRISPR array Location: 830566-830792 bp Num of repeats: 4 Spacers: s12-s14 CRISPR array Location: 830566-830792 bp Num of repeats: 4 Spacers: s12-s14 CRISPR array Location: 1178055-1179794 bp Num of repeats: 27 Spacers: s15-s40 CRISPR array Location: 1178055-1179794 bp Num of repeats: 27 Spacers: s15-s40 CRISPR array Location: 1331799-1332616 bp Num of repeats: 13 Spacers: s41-s52 CRISPR array Location: 1331799-1332616 bp Num of repeats: 13 Spacers: s41-s52 CRISPR array Location: 1333219-1333773 bp Num of repeats: 9 Spacers: s53-s60 CRISPR array Location: 1333219-1333773 bp Num of repeats: 9 Spacers: s53-s60 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 240421-240978 bp]: array | spacers
           [Locus range 488820-489047 bp]: array | spacers
           [Locus range 830566-830792 bp]: array | spacers
           [Locus range 1178055-1179794 bp]: array | spacers
           [Locus range 1331799-1332616 bp]: array | spacers
           [Locus range 1333219-1333773 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUNK01000002.1 Clostridioides difficile strain VRECD0013 genome assembly, contig: ERS716897SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 568186 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 80133-80561 bp 2 Locus 2: 196911-197332 bp 3 Locus 3: 400867-401293 bp Zoom in on locus 1 x7 Zoom in on locus 2 x7 Zoom in on locus 3 x7 CRISPR array Location: 80133-80561 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 80133-80561 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 196911-197332 bp Num of repeats: 7 Spacers: s7-s12 CRISPR array Location: 196911-197332 bp Num of repeats: 7 Spacers: s7-s12 CRISPR array Location: 400867-401293 bp Num of repeats: 7 Spacers: s13-s18 CRISPR array Location: 400867-401293 bp Num of repeats: 7 Spacers: s13-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 80133-80561 bp]: array | spacers
           [Locus range 196911-197332 bp]: array | spacers
           [Locus range 400867-401293 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)