CRISPRone

CRISPRone report for GCA_900164615.1_16852_2_6

♦ Seq 1: FUNJ01000008.1 Clostridioides difficile strain VRECD0016 genome assembly, contig: ERS716899SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 280967 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 190378-191066 bp Zoom in on locus 1 x11 CRISPR array Location: 190378-191066 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 190378-191066 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 190378-191066 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUNJ01000005.1 Clostridioides difficile strain VRECD0016 genome assembly, contig: ERS716899SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 338550 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 14158-14780 bp 2 Locus 2: 106787-107280 bp 3 Locus 3: 217573-218462 bp Zoom in on locus 1 x10 Zoom in on locus 2 x8 Zoom in on locus 3 x14 CRISPR array Location: 14158-14780 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 14158-14780 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 106787-107280 bp Num of repeats: 8 Spacers: s10-s16 CRISPR array Location: 106787-107280 bp Num of repeats: 8 Spacers: s10-s16 CRISPR array Location: 217573-218462 bp Num of repeats: 14 Spacers: s17-s29 CRISPR array Location: 217573-218462 bp Num of repeats: 14 Spacers: s17-s29 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 14158-14780 bp]: array | spacers
           [Locus range 106787-107280 bp]: array | spacers
           [Locus range 217573-218462 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUNJ01000003.1 Clostridioides difficile strain VRECD0016 genome assembly, contig: ERS716899SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 412204 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252358-263901 bp Zoom in on locus 1 x31 CRISPR array Location: 252358-254363 bp Num of repeats: 31 Spacers: s1-s30 CRISPR array Location: 252358-254363 bp Num of repeats: 31 Spacers: s1-s30 Gene: cd09725:cas2 Type: universal Location: 254547-254813 bp Gene: cd09722:cas1 Type: universal Location: 254816-255796 bp Gene: pfam01930:cas4 Type: Type-I Location: 255799-256317 bp Gene: COG1203:cas3 Type: Type-I Location: 256365-258686 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 258697-259398 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 259400-260314 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 260316-262166 bp Gene: pfam01881:cas6 Type: other Location: 262172-262966 bp Gene: pfam13280:WYL Type: other Location: 262987-263901 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252358-254363 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUNJ01000004.1 Clostridioides difficile strain VRECD0016 genome assembly, contig: ERS716899SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 347042 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 121018-122100 bp Zoom in on locus 1 x17 CRISPR array Location: 121018-122100 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 121018-122100 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 121018-122100 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUNJ01000001.1 Clostridioides difficile strain VRECD0016 genome assembly, contig: ERS716899SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 912794 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91573-91667 bp 2 Locus 2: 456524-457349 bp 3 Locus 3: 619850-627715 bp 4 Locus 4: 702902-703127 bp Zoom in on locus 1 x2 Zoom in on locus 2 x13 Zoom in on locus 3 Zoom in on locus 4 x4 CRISPR array Location: 91573-91667 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 91573-91667 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 456524-457349 bp Num of repeats: 13 Spacers: s2-s13 CRISPR array Location: 456524-457349 bp Num of repeats: 13 Spacers: s2-s13 Gene: cd09641:cas3HD Type: Type-I Location: 619850-622258 bp Gene: cd09693:cas5 Type: Type-I Location: 622285-623082 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 623098-624111 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 624131-625606 bp Gene: pfam01881:cas6 Type: other Location: 625611-626348 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 626606-627715 bp CRISPR array Location: 702902-703127 bp Num of repeats: 4 Spacers: s14-s16 CRISPR array Location: 702902-703127 bp Num of repeats: 4 Spacers: s14-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 91573-91667 bp]: array | spacers
           [Locus range 456524-457349 bp]: array | spacers
           [Locus range 702902-703127 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)