CRISPRone

CRISPRone report for GCA_900164625.1_16852_2_10

♦ Seq 1: FUNL01000004.1 Clostridioides difficile strain VRECD0004 genome assembly, contig: ERS716903SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 519469 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 499168-499261 bp Zoom in on locus 1 x2 CRISPR array Location: 499168-499261 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 499168-499261 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 499168-499261 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUNL01000002.1 Clostridioides difficile strain VRECD0004 genome assembly, contig: ERS716903SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 950312 bp; # of CRISPR array = 6; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61161-62901 bp 2 Locus 2: 347027-349001 bp 3 Locus 3: 438525-439283 bp 4 Locus 4: 555633-556054 bp 5 Locus 5: 759589-760015 bp Zoom in on locus 1 x27 Zoom in on locus 2 x13 x9 Zoom in on locus 3 x12 Zoom in on locus 4 x7 Zoom in on locus 5 x7 CRISPR array Location: 61161-62901 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 61161-62901 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 347027-347844 bp Num of repeats: 13 Spacers: s27-s38 CRISPR array Location: 347027-347844 bp Num of repeats: 13 Spacers: s27-s38 CRISPR array Location: 348447-349001 bp Num of repeats: 9 Spacers: s39-s46 CRISPR array Location: 348447-349001 bp Num of repeats: 9 Spacers: s39-s46 CRISPR array Location: 438525-439283 bp Num of repeats: 12 Spacers: s47-s57 CRISPR array Location: 438525-439283 bp Num of repeats: 12 Spacers: s47-s57 CRISPR array Location: 555633-556054 bp Num of repeats: 7 Spacers: s58-s63 CRISPR array Location: 555633-556054 bp Num of repeats: 7 Spacers: s58-s63 CRISPR array Location: 759589-760015 bp Num of repeats: 7 Spacers: s64-s69 CRISPR array Location: 759589-760015 bp Num of repeats: 7 Spacers: s64-s69 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 61161-62901 bp]: array | spacers
           [Locus range 347027-347844 bp]: array | spacers
           [Locus range 348447-349001 bp]: array | spacers
           [Locus range 438525-439283 bp]: array | spacers
           [Locus range 555633-556054 bp]: array | spacers
           [Locus range 759589-760015 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUNL01000001.1 Clostridioides difficile strain VRECD0004 genome assembly, contig: ERS716903SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 999944 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 140916-141141 bp 2 Locus 2: 482656-482882 bp 3 Locus 3: 676905-684770 bp 4 Locus 4: 758991-759547 bp Zoom in on locus 1 x4 Zoom in on locus 2 x4 Zoom in on locus 3 Zoom in on locus 4 x9 CRISPR array Location: 140916-141141 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 140916-141141 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 482656-482882 bp Num of repeats: 4 Spacers: s4-s6 CRISPR array Location: 482656-482882 bp Num of repeats: 4 Spacers: s4-s6 Gene: cd09641:cas3HD Type: Type-I Location: 676905-679313 bp Gene: cd09693:cas5 Type: Type-I Location: 679340-680137 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 680153-681166 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 681186-682661 bp Gene: pfam01881:cas6 Type: other Location: 682666-683403 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 683661-684770 bp CRISPR array Location: 758991-759547 bp Num of repeats: 9 Spacers: s7-s14 CRISPR array Location: 758991-759547 bp Num of repeats: 9 Spacers: s7-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 140916-141141 bp]: array | spacers
           [Locus range 482656-482882 bp]: array | spacers
           [Locus range 758991-759547 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)