CRISPRone

CRISPRone report for GCA_900164635.1_16852_2_13

♦ Seq 1: FUNN01000002.1 Clostridioides difficile strain VRECD0008 genome assembly, contig: ERS716906SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 423803 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 256213-267158 bp Zoom in on locus 1 x22 CRISPR array Location: 256213-257620 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 256213-257620 bp Num of repeats: 22 Spacers: s1-s21 Gene: cd09725:cas2 Type: universal Location: 257804-258070 bp Gene: cd09722:cas1 Type: universal Location: 258073-259053 bp Gene: pfam01930:cas4 Type: Type-I Location: 259056-259574 bp Gene: COG1203:cas3 Type: Type-I Location: 259622-261943 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 261954-262655 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 262657-263571 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 263573-265423 bp Gene: pfam01881:cas6 Type: other Location: 265429-266223 bp Gene: pfam13280:WYL Type: other Location: 266244-267158 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 256213-257620 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUNN01000001.1 Clostridioides difficile strain VRECD0008 genome assembly, contig: ERS716906SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1583085 bp; # of CRISPR array = 8; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 64303-65976 bp 2 Locus 2: 197598-200652 bp 3 Locus 3: 293014-293501 bp 4 Locus 4: 403801-404754 bp 5 Locus 5: 745504-745598 bp 6 Locus 6: 1099157-1099711 bp 7 Locus 7: 1262251-1270116 bp 8 Locus 8: 1343396-1343555 bp Zoom in on locus 1 x26 Zoom in on locus 2 x3 x4 Zoom in on locus 3 x8 Zoom in on locus 4 x15 Zoom in on locus 5 x2 Zoom in on locus 6 x9 Zoom in on locus 7 Zoom in on locus 8 x3 CRISPR array Location: 64303-65976 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 64303-65976 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 197598-197758 bp Num of repeats: 3 Spacers: s26-s27 CRISPR array Location: 197598-197758 bp Num of repeats: 3 Spacers: s26-s27 CRISPR array Location: 200426-200652 bp Num of repeats: 4 Spacers: s28-s30 CRISPR array Location: 200426-200652 bp Num of repeats: 4 Spacers: s28-s30 CRISPR array Location: 293014-293501 bp Num of repeats: 8 Spacers: s31-s37 CRISPR array Location: 293014-293501 bp Num of repeats: 8 Spacers: s31-s37 CRISPR array Location: 403801-404754 bp Num of repeats: 15 Spacers: s38-s51 CRISPR array Location: 403801-404754 bp Num of repeats: 15 Spacers: s38-s51 CRISPR array Location: 745504-745598 bp Num of repeats: 2 Spacers: s52-s52 CRISPR array Location: 745504-745598 bp Num of repeats: 2 Spacers: s52-s52 CRISPR array Location: 1099157-1099711 bp Num of repeats: 9 Spacers: s53-s60 CRISPR array Location: 1099157-1099711 bp Num of repeats: 9 Spacers: s53-s60 Gene: cd09641:cas3HD Type: Type-I Location: 1262251-1264659 bp Gene: cd09693:cas5 Type: Type-I Location: 1264686-1265483 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1265499-1266512 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 1266532-1268007 bp Gene: pfam01881:cas6 Type: other Location: 1268012-1268749 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 1269007-1270116 bp CRISPR array Location: 1343396-1343555 bp Num of repeats: 3 Spacers: s61-s62 CRISPR array Location: 1343396-1343555 bp Num of repeats: 3 Spacers: s61-s62 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 64303-65976 bp]: array | spacers
           [Locus range 197598-197758 bp]: array | spacers
           [Locus range 200426-200652 bp]: array | spacers
           [Locus range 293014-293501 bp]: array | spacers
           [Locus range 403801-404754 bp]: array | spacers
           [Locus range 745504-745598 bp]: array | spacers
           [Locus range 1099157-1099711 bp]: array | spacers
           [Locus range 1343396-1343555 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUNN01000015.1 Clostridioides difficile strain VRECD0008 genome assembly, contig: ERS716906SCcontig000015, whole genome shotgun sequence

⇒Summary: seq-len = 14923 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1873-2887 bp Zoom in on locus 1 x16 CRISPR array Location: 1873-2887 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 1873-2887 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1873-2887 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)