CRISPRone

CRISPRone report for GCA_900164645.1_16852_2_11

♦ Seq 1: FUNM01000001.1 Clostridioides difficile strain VRECD0001 genome assembly, contig: ERS716904SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1500239 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 129713-129938 bp 2 Locus 2: 478038-478724 bp 3 Locus 3: 640679-648997 bp 4 Locus 4: 722279-722373 bp Zoom in on locus 1 x4 Zoom in on locus 2 x11 Zoom in on locus 3 Zoom in on locus 4 x2 CRISPR array Location: 129713-129938 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 129713-129938 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 478038-478724 bp Num of repeats: 11 Spacers: s4-s13 CRISPR array Location: 478038-478724 bp Num of repeats: 11 Spacers: s4-s13 Gene: cd09641:cas3HD Type: Type-I Location: 640679-643087 bp Gene: cd09693:cas5 Type: Type-I Location: 643114-643911 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 643927-644940 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 644960-646435 bp Gene: pfam01881:cas6 Type: other Location: 646440-647177 bp Gene: unk Type: unknown Location: 647278-647454 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 647888-648997 bp CRISPR array Location: 722279-722373 bp Num of repeats: 2 Spacers: s14-s14 CRISPR array Location: 722279-722373 bp Num of repeats: 2 Spacers: s14-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 129713-129938 bp]: array | spacers
           [Locus range 478038-478724 bp]: array | spacers
           [Locus range 722279-722373 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUNM01000005.1 Clostridioides difficile strain VRECD0001 genome assembly, contig: ERS716904SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 213762 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 163913-174362 bp Zoom in on locus 1 x14 Gene: pfam13280:WYL Type: other Location: 163913-164827 bp Gene: pfam01881:cas6 Type: other Location: 164848-165642 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 165648-167525 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 167527-168441 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 168443-169144 bp Gene: cd09641:cas3HD Type: Type-I Location: 169155-171476 bp Gene: pfam01930:cas4 Type: Type-I Location: 171491-172042 bp Gene: cd09722:cas1 Type: universal Location: 172045-173025 bp Gene: cd09725:cas2 Type: universal Location: 173028-173294 bp CRISPR array Location: 173478-174362 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 173478-174362 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 173478-174362 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUNM01000017.1 Clostridioides difficile strain VRECD0001 genome assembly, contig: ERS716904SCcontig000017, whole genome shotgun sequence

⇒Summary: seq-len = 28522 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 15397-17913 bp Zoom in on locus 1 x8 x6 CRISPR array Location: 15397-15888 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 15397-15888 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 17554-17913 bp Num of repeats: 6 Spacers: s8-s12 CRISPR array Location: 17554-17913 bp Num of repeats: 6 Spacers: s8-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 15397-15888 bp]: array | spacers
           [Locus range 17554-17913 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUNM01000002.1 Clostridioides difficile strain VRECD0001 genome assembly, contig: ERS716904SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 799464 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 64374-65520 bp 2 Locus 2: 350095-350520 bp 3 Locus 3: 460808-461229 bp Zoom in on locus 1 x18 Zoom in on locus 2 x7 Zoom in on locus 3 x7 CRISPR array Location: 64374-65520 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 64374-65520 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 350095-350520 bp Num of repeats: 7 Spacers: s18-s23 CRISPR array Location: 350095-350520 bp Num of repeats: 7 Spacers: s18-s23 CRISPR array Location: 460808-461229 bp Num of repeats: 7 Spacers: s24-s29 CRISPR array Location: 460808-461229 bp Num of repeats: 7 Spacers: s24-s29 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 64374-65520 bp]: array | spacers
           [Locus range 350095-350520 bp]: array | spacers
           [Locus range 460808-461229 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUNM01000003.1 Clostridioides difficile strain VRECD0001 genome assembly, contig: ERS716904SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 388207 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 284780-284874 bp Zoom in on locus 1 x2 CRISPR array Location: 284780-284874 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 284780-284874 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 284780-284874 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)