CRISPRone

CRISPRone report for GCA_900164655.1_16852_2_14

♦ Seq 1: FUNO01000003.1 Clostridioides difficile strain VRECD0005 genome assembly, contig: ERS716907SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 675134 bp; # of CRISPR array = 5; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 57955-61009 bp 2 Locus 2: 153503-154122 bp 3 Locus 3: 263382-263542 bp 4 Locus 4: 480358-480452 bp Zoom in on locus 1 x3 x4 Zoom in on locus 2 x10 Zoom in on locus 3 x3 Zoom in on locus 4 x2 CRISPR array Location: 57955-58115 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 57955-58115 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 60783-61009 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 60783-61009 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 153503-154122 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 153503-154122 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 263382-263542 bp Num of repeats: 3 Spacers: s15-s16 CRISPR array Location: 263382-263542 bp Num of repeats: 3 Spacers: s15-s16 CRISPR array Location: 480358-480452 bp Num of repeats: 2 Spacers: s17-s17 CRISPR array Location: 480358-480452 bp Num of repeats: 2 Spacers: s17-s17 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 57955-58115 bp]: array | spacers
           [Locus range 60783-61009 bp]: array | spacers
           [Locus range 153503-154122 bp]: array | spacers
           [Locus range 263382-263542 bp]: array | spacers
           [Locus range 480358-480452 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUNO01000001.1 Clostridioides difficile strain VRECD0005 genome assembly, contig: ERS716907SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1101230 bp; # of CRISPR array = 2; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 121805-122225 bp 2 Locus 2: 851228-862186 bp 3 Locus 3: 913396-923119 bp 4 Locus 4: 1002906-1003262 bp Zoom in on locus 1 x7 Zoom in on locus 2 Zoom in on locus 3 Zoom in on locus 4 x6 CRISPR array Location: 121805-122225 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 121805-122225 bp Num of repeats: 7 Spacers: s1-s6 Gene: cd06127:DEDDh Type: Type-I Location: 851228-851734 bp Gene: unk Type: unknown Location: 851893-852561 bp Gene: unk Type: unknown Location: 852974-853480 bp Gene: cd06127:DEDDh Type: Type-I Location: 853852-854889 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 861701-862186 bp Gene: cd09641:cas3HD Type: Type-I Location: 913396-915804 bp Gene: cd09693:cas5 Type: Type-I Location: 915831-916628 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 916644-917657 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 917677-919143 bp Gene: pfam01881:cas6 Type: other Location: 919148-919885 bp Gene: unk Type: unknown Location: 920199-920657 bp Gene: cas14:cas14 Type: Type-V Location: 920685-921857 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 922010-923119 bp CRISPR array Location: 1002906-1003262 bp Num of repeats: 6 Spacers: s7-s11 CRISPR array Location: 1002906-1003262 bp Num of repeats: 6 Spacers: s7-s11 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 121805-122225 bp]: array | spacers
           [Locus range 1002906-1003262 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)