CRISPRone

CRISPRone report for GCA_900164665.1_16852_2_16

♦ Seq 1: FUNP01000004.1 Clostridioides difficile strain VRECD0015 genome assembly, contig: ERS716909SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 387710 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 102917-103010 bp Zoom in on locus 1 x2 CRISPR array Location: 102917-103010 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 102917-103010 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 102917-103010 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUNP01000014.1 Clostridioides difficile strain VRECD0015 genome assembly, contig: ERS716909SCcontig000014, whole genome shotgun sequence

⇒Summary: seq-len = 12855 bp; # of CRISPR array = 0; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7960-9870 bp Zoom in on locus 1 Gene: COG3513:cas9 Type: Type-II Location: 7960-8388 bp Gene: pfam00078:RT Type: other Location: 8434-9870 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUNP01000001.1 Clostridioides difficile strain VRECD0015 genome assembly, contig: ERS716909SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1831209 bp; # of CRISPR array = 6; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 239032-239127 bp 2 Locus 2: 312408-320726 bp 3 Locus 3: 482698-483385 bp 4 Locus 4: 831606-831832 bp 5 Locus 5: 1157699-1158780 bp 6 Locus 6: 1335448-1335873 bp 7 Locus 7: 1446161-1446581 bp Zoom in on locus 1 x2 Zoom in on locus 2 Zoom in on locus 3 x11 Zoom in on locus 4 x4 Zoom in on locus 5 x17 Zoom in on locus 6 x7 Zoom in on locus 7 x7 CRISPR array Location: 239032-239127 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 239032-239127 bp Num of repeats: 2 Spacers: s1-s1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 312408-313517 bp Gene: unk Type: unknown Location: 313951-314127 bp Gene: pfam01881:cas6 Type: other Location: 314228-314965 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 314970-316445 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 316465-317478 bp Gene: cd09693:cas5 Type: Type-I Location: 317494-318291 bp Gene: cd09641:cas3HD Type: Type-I Location: 318318-320726 bp CRISPR array Location: 482698-483385 bp Num of repeats: 11 Spacers: s2-s11 CRISPR array Location: 482698-483385 bp Num of repeats: 11 Spacers: s2-s11 CRISPR array Location: 831606-831832 bp Num of repeats: 4 Spacers: s12-s14 CRISPR array Location: 831606-831832 bp Num of repeats: 4 Spacers: s12-s14 CRISPR array Location: 1157699-1158780 bp Num of repeats: 17 Spacers: s15-s30 CRISPR array Location: 1157699-1158780 bp Num of repeats: 17 Spacers: s15-s30 CRISPR array Location: 1335448-1335873 bp Num of repeats: 7 Spacers: s31-s36 CRISPR array Location: 1335448-1335873 bp Num of repeats: 7 Spacers: s31-s36 CRISPR array Location: 1446161-1446581 bp Num of repeats: 7 Spacers: s37-s42 CRISPR array Location: 1446161-1446581 bp Num of repeats: 7 Spacers: s37-s42 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 239032-239127 bp]: array | spacers
           [Locus range 482698-483385 bp]: array | spacers
           [Locus range 831606-831832 bp]: array | spacers
           [Locus range 1157699-1158780 bp]: array | spacers
           [Locus range 1335448-1335873 bp]: array | spacers
           [Locus range 1446161-1446581 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUNP01000003.1 Clostridioides difficile strain VRECD0015 genome assembly, contig: ERS716909SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 477718 bp; # of CRISPR array = 3; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 163941-174363 bp 2 Locus 2: 229880-232396 bp Zoom in on locus 1 x14 Zoom in on locus 2 x8 x6 Gene: pfam13280:WYL Type: other Location: 163941-164828 bp Gene: pfam01881:cas6 Type: other Location: 164906-165643 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 165649-167526 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 167528-168442 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 168444-169145 bp Gene: COG1203:cas3 Type: Type-I Location: 169156-171477 bp Gene: pfam01930:cas4 Type: Type-I Location: 171492-172043 bp Gene: cd09722:cas1 Type: universal Location: 172046-173026 bp Gene: cd09725:cas2 Type: universal Location: 173029-173295 bp CRISPR array Location: 173479-174363 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 173479-174363 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 229880-230371 bp Num of repeats: 8 Spacers: s14-s20 CRISPR array Location: 229880-230371 bp Num of repeats: 8 Spacers: s14-s20 CRISPR array Location: 232037-232396 bp Num of repeats: 6 Spacers: s21-s25 CRISPR array Location: 232037-232396 bp Num of repeats: 6 Spacers: s21-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 173479-174363 bp]: array | spacers
           [Locus range 229880-230371 bp]: array | spacers
           [Locus range 232037-232396 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)