CRISPRone

CRISPRone report for GCA_900164675.1_16852_2_17

♦ Seq 1: FUNQ01000002.1 Clostridioides difficile strain VRECD0007 genome assembly, contig: ERS716910SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 834997 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 259660-270811 bp 2 Locus 2: 515058-515151 bp Zoom in on locus 1 x25 Zoom in on locus 2 x2 CRISPR array Location: 259660-261273 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 259660-261273 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09725:cas2 Type: universal Location: 261457-261723 bp Gene: cd09722:cas1 Type: universal Location: 261726-262706 bp Gene: pfam01930:cas4 Type: Type-I Location: 262709-263227 bp Gene: cd09641:cas3HD Type: Type-I Location: 263275-265596 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 265607-266308 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 266310-267224 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 267226-269076 bp Gene: pfam01881:cas6 Type: other Location: 269082-269876 bp Gene: pfam13280:WYL Type: other Location: 269897-270811 bp CRISPR array Location: 515058-515151 bp Num of repeats: 2 Spacers: s25-s25 CRISPR array Location: 515058-515151 bp Num of repeats: 2 Spacers: s25-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 259660-261273 bp]: array | spacers
           [Locus range 515058-515151 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUNQ01000004.1 Clostridioides difficile strain VRECD0007 genome assembly, contig: ERS716910SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 449244 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90928-91351 bp 2 Locus 2: 311436-311727 bp Zoom in on locus 1 x7 Zoom in on locus 2 x5 CRISPR array Location: 90928-91351 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 90928-91351 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 311436-311727 bp Num of repeats: 5 Spacers: s7-s10 CRISPR array Location: 311436-311727 bp Num of repeats: 5 Spacers: s7-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90928-91351 bp]: array | spacers
           [Locus range 311436-311727 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUNQ01000005.1 Clostridioides difficile strain VRECD0007 genome assembly, contig: ERS716910SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 297540 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19039-19662 bp 2 Locus 2: 100877-101038 bp 3 Locus 3: 239507-240919 bp Zoom in on locus 1 x10 Zoom in on locus 2 x3 Zoom in on locus 3 x22 CRISPR array Location: 19039-19662 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 19039-19662 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 100877-101038 bp Num of repeats: 3 Spacers: s10-s11 CRISPR array Location: 100877-101038 bp Num of repeats: 3 Spacers: s10-s11 CRISPR array Location: 239507-240919 bp Num of repeats: 22 Spacers: s12-s32 CRISPR array Location: 239507-240919 bp Num of repeats: 22 Spacers: s12-s32 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 19039-19662 bp]: array | spacers
           [Locus range 100877-101038 bp]: array | spacers
           [Locus range 239507-240919 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUNQ01000001.1 Clostridioides difficile strain VRECD0007 genome assembly, contig: ERS716910SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 993005 bp; # of CRISPR array = 6; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 140894-144827 bp 2 Locus 2: 180550-181039 bp 3 Locus 3: 199111-200715 bp 4 Locus 4: 504299-504724 bp 5 Locus 5: 667144-675009 bp 6 Locus 6: 748290-748384 bp Zoom in on locus 1 x6 x6 Zoom in on locus 2 x8 Zoom in on locus 3 x25 Zoom in on locus 4 x7 Zoom in on locus 5 Zoom in on locus 6 x2 CRISPR array Location: 140894-141250 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 140894-141250 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 144471-144827 bp Num of repeats: 6 Spacers: s6-s10 CRISPR array Location: 144471-144827 bp Num of repeats: 6 Spacers: s6-s10 CRISPR array Location: 180550-181039 bp Num of repeats: 8 Spacers: s11-s17 CRISPR array Location: 180550-181039 bp Num of repeats: 8 Spacers: s11-s17 CRISPR array Location: 199111-200715 bp Num of repeats: 25 Spacers: s18-s41 CRISPR array Location: 199111-200715 bp Num of repeats: 25 Spacers: s18-s41 CRISPR array Location: 504299-504724 bp Num of repeats: 7 Spacers: s42-s47 CRISPR array Location: 504299-504724 bp Num of repeats: 7 Spacers: s42-s47 Gene: cd09641:cas3HD Type: Type-I Location: 667144-669552 bp Gene: cd09693:cas5 Type: Type-I Location: 669579-670376 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 670392-671405 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 671425-672900 bp Gene: pfam01881:cas6 Type: other Location: 672905-673642 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 673900-675009 bp CRISPR array Location: 748290-748384 bp Num of repeats: 2 Spacers: s48-s48 CRISPR array Location: 748290-748384 bp Num of repeats: 2 Spacers: s48-s48 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 140894-141250 bp]: array | spacers
           [Locus range 144471-144827 bp]: array | spacers
           [Locus range 180550-181039 bp]: array | spacers
           [Locus range 199111-200715 bp]: array | spacers
           [Locus range 504299-504724 bp]: array | spacers
           [Locus range 748290-748384 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUNQ01000006.1 Clostridioides difficile strain VRECD0007 genome assembly, contig: ERS716910SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 265369 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 229971-230199 bp Zoom in on locus 1 x4 CRISPR array Location: 229971-230199 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 229971-230199 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 229971-230199 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FUNQ01000020.1 Clostridioides difficile strain VRECD0007 genome assembly, contig: ERS716910SCcontig000020, whole genome shotgun sequence

⇒Summary: seq-len = 13683 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4498-5186 bp Zoom in on locus 1 x11 CRISPR array Location: 4498-5186 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 4498-5186 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4498-5186 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)