CRISPRone

CRISPRone report for GCA_900164705.1_16852_2_27

♦ Seq 1: FUNT01000002.1 Clostridioides difficile strain VRECD0002 genome assembly, contig: ERS716920SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 655006 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 251915-262548 bp Zoom in on locus 1 x16 CRISPR array Location: 251915-252929 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 251915-252929 bp Num of repeats: 16 Spacers: s1-s15 Gene: cd09725:cas2 Type: universal Location: 253113-253379 bp Gene: cd09722:cas1 Type: universal Location: 253382-254362 bp Gene: pfam01930:cas4 Type: Type-I Location: 254365-254883 bp Gene: cd09641:cas3HD Type: Type-I Location: 254931-257252 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 257263-257964 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 257966-258880 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 258882-260759 bp Gene: pfam01881:cas6 Type: other Location: 260765-261559 bp Gene: pfam13280:WYL Type: other Location: 261580-262548 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 251915-252929 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUNT01000004.1 Clostridioides difficile strain VRECD0002 genome assembly, contig: ERS716920SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 332824 bp; # of CRISPR array = 6; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8103-13422 bp 2 Locus 2: 99778-100268 bp 3 Locus 3: 208666-209156 bp Zoom in on locus 1 x6 x5 x6 x4 Zoom in on locus 2 x8 Zoom in on locus 3 x8 CRISPR array Location: 8103-8460 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 8103-8460 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 10299-10588 bp Num of repeats: 5 Spacers: s6-s9 CRISPR array Location: 10299-10588 bp Num of repeats: 5 Spacers: s6-s9 CRISPR array Location: 12233-12592 bp Num of repeats: 6 Spacers: s10-s14 CRISPR array Location: 12233-12592 bp Num of repeats: 6 Spacers: s10-s14 CRISPR array Location: 13195-13422 bp Num of repeats: 4 Spacers: s15-s17 CRISPR array Location: 13195-13422 bp Num of repeats: 4 Spacers: s15-s17 CRISPR array Location: 99778-100268 bp Num of repeats: 8 Spacers: s18-s24 CRISPR array Location: 99778-100268 bp Num of repeats: 8 Spacers: s18-s24 CRISPR array Location: 208666-209156 bp Num of repeats: 8 Spacers: s25-s31 CRISPR array Location: 208666-209156 bp Num of repeats: 8 Spacers: s25-s31 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8103-8460 bp]: array | spacers
           [Locus range 10299-10588 bp]: array | spacers
           [Locus range 12233-12592 bp]: array | spacers
           [Locus range 13195-13422 bp]: array | spacers
           [Locus range 99778-100268 bp]: array | spacers
           [Locus range 208666-209156 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUNT01000001.1 Clostridioides difficile strain VRECD0002 genome assembly, contig: ERS716920SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1318471 bp; # of CRISPR array = 4; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 514854-515144 bp 2 Locus 2: 566217-566508 bp 3 Locus 3: 860956-861115 bp 4 Locus 4: 1024406-1032752 bp 5 Locus 5: 1106033-1106592 bp Zoom in on locus 1 x5 Zoom in on locus 2 x5 Zoom in on locus 3 x3 Zoom in on locus 4 Zoom in on locus 5 x9 CRISPR array Location: 514854-515144 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 514854-515144 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 566217-566508 bp Num of repeats: 5 Spacers: s5-s8 CRISPR array Location: 566217-566508 bp Num of repeats: 5 Spacers: s5-s8 CRISPR array Location: 860956-861115 bp Num of repeats: 3 Spacers: s9-s10 CRISPR array Location: 860956-861115 bp Num of repeats: 3 Spacers: s9-s10 Gene: cd09641:cas3HD Type: Type-I Location: 1024406-1026814 bp Gene: cd09693:cas5 Type: Type-I Location: 1026841-1027638 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1027654-1028670 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 1028690-1030165 bp Gene: pfam01881:cas6 Type: other Location: 1030170-1030907 bp Gene: unk Type: unknown Location: 1031008-1031184 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 1031643-1032752 bp CRISPR array Location: 1106033-1106592 bp Num of repeats: 9 Spacers: s11-s18 CRISPR array Location: 1106033-1106592 bp Num of repeats: 9 Spacers: s11-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 514854-515144 bp]: array | spacers
           [Locus range 566217-566508 bp]: array | spacers
           [Locus range 860956-861115 bp]: array | spacers
           [Locus range 1106033-1106592 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUNT01000008.1 Clostridioides difficile strain VRECD0002 genome assembly, contig: ERS716920SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 145551 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 32661-33803 bp Zoom in on locus 1 x18 CRISPR array Location: 32661-33803 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 32661-33803 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 32661-33803 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)