CRISPRone

CRISPRone report for GCA_900164725.1_16852_2_36

♦ Seq 1: FUNV01000003.1 Clostridioides difficile strain VRECD0040 genome assembly, contig: ERS716929SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 451801 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 53142-54761 bp 2 Locus 2: 193519-193809 bp 3 Locus 3: 273488-273848 bp 4 Locus 4: 387730-389012 bp Zoom in on locus 1 x25 Zoom in on locus 2 x5 Zoom in on locus 3 x6 Zoom in on locus 4 x20 CRISPR array Location: 53142-54761 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 53142-54761 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 193519-193809 bp Num of repeats: 5 Spacers: s25-s28 CRISPR array Location: 193519-193809 bp Num of repeats: 5 Spacers: s25-s28 CRISPR array Location: 273488-273848 bp Num of repeats: 6 Spacers: s29-s33 CRISPR array Location: 273488-273848 bp Num of repeats: 6 Spacers: s29-s33 CRISPR array Location: 387730-389012 bp Num of repeats: 20 Spacers: s34-s52 CRISPR array Location: 387730-389012 bp Num of repeats: 20 Spacers: s34-s52 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 53142-54761 bp]: array | spacers
           [Locus range 193519-193809 bp]: array | spacers
           [Locus range 273488-273848 bp]: array | spacers
           [Locus range 387730-389012 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUNV01000004.1 Clostridioides difficile strain VRECD0040 genome assembly, contig: ERS716929SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 347499 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 55182-66983 bp Zoom in on locus 1 x35 Gene: pfam13280:WYL Type: other Location: 55182-56069 bp Gene: pfam01881:cas6 Type: other Location: 56147-56884 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 56890-58767 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 58769-59683 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 59685-60386 bp Gene: cd09641:cas3HD Type: Type-I Location: 60397-62718 bp Gene: pfam01930:cas4 Type: Type-I Location: 62733-63284 bp Gene: cd09722:cas1 Type: universal Location: 63287-64267 bp Gene: cd09725:cas2 Type: universal Location: 64270-64536 bp CRISPR array Location: 64720-66983 bp Num of repeats: 35 Spacers: s1-s34 CRISPR array Location: 64720-66983 bp Num of repeats: 35 Spacers: s1-s34 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 64720-66983 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUNV01000005.1 Clostridioides difficile strain VRECD0040 genome assembly, contig: ERS716929SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 265032 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 31092-31253 bp Zoom in on locus 1 x3 CRISPR array Location: 31092-31253 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 31092-31253 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 31092-31253 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUNV01000007.1 Clostridioides difficile strain VRECD0040 genome assembly, contig: ERS716929SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 262643 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 137820-138711 bp Zoom in on locus 1 x14 CRISPR array Location: 137820-138711 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 137820-138711 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 137820-138711 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUNV01000001.1 Clostridioides difficile strain VRECD0040 genome assembly, contig: ERS716929SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 815738 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 244855-245610 bp 2 Locus 2: 318884-327202 bp 3 Locus 3: 492701-494055 bp Zoom in on locus 1 x12 Zoom in on locus 2 Zoom in on locus 3 x21 CRISPR array Location: 244855-245610 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 244855-245610 bp Num of repeats: 12 Spacers: s1-s11 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 318884-319993 bp Gene: unk Type: unknown Location: 320427-320603 bp Gene: pfam01881:cas6 Type: other Location: 320704-321441 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 321446-322921 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 322941-323954 bp Gene: cd09693:cas5 Type: Type-I Location: 323970-324767 bp Gene: cd09641:cas3HD Type: Type-I Location: 324794-327202 bp CRISPR array Location: 492701-494055 bp Num of repeats: 21 Spacers: s12-s31 CRISPR array Location: 492701-494055 bp Num of repeats: 21 Spacers: s12-s31 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 244855-245610 bp]: array | spacers
           [Locus range 492701-494055 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FUNV01000008.1 Clostridioides difficile strain VRECD0040 genome assembly, contig: ERS716929SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 184943 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 150829-158148 bp Zoom in on locus 1 x22 CRISPR array Location: 150829-152238 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 150829-152238 bp Num of repeats: 22 Spacers: s1-s21 Gene: COG1203:cas3 Type: Type-I Location: 152491-154476 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 154487-155557 bp Gene: cd09754:cas8b2 Type: Subtype-I-B Location: 155578-156744 bp Gene: pfam01881:cas6 Type: other Location: 156746-157510 bp Gene: cd09693:cas5 Type: Type-I Location: 157501-158148 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 150829-152238 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)