CRISPRone

CRISPRone report for GCA_900164735.1_16852_2_37

♦ Seq 1: FUNW01000013.1 Clostridioides difficile strain VRECD0041 genome assembly, contig: ERS716930SCcontig000013, whole genome shotgun sequence

⇒Summary: seq-len = 78424 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 57894-58648 bp Zoom in on locus 1 x12 CRISPR array Location: 57894-58648 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 57894-58648 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 57894-58648 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUNW01000002.1 Clostridioides difficile strain VRECD0041 genome assembly, contig: ERS716930SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 570343 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 307197-318074 bp Zoom in on locus 1 x21 Gene: pfam13280:WYL Type: other Location: 307197-308111 bp Gene: pfam01881:cas6 Type: other Location: 308189-308926 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 308932-310782 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 310784-311698 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 311700-312401 bp Gene: COG1203:cas3 Type: Type-I Location: 312412-314733 bp Gene: pfam01930:cas4 Type: Type-I Location: 314748-315299 bp Gene: cd09722:cas1 Type: universal Location: 315302-316282 bp Gene: cd09725:cas2 Type: universal Location: 316285-316551 bp CRISPR array Location: 316735-318074 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 316735-318074 bp Num of repeats: 21 Spacers: s1-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 316735-318074 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUNW01000007.1 Clostridioides difficile strain VRECD0041 genome assembly, contig: ERS716930SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 175778 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 118185-119138 bp Zoom in on locus 1 x15 CRISPR array Location: 118185-119138 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 118185-119138 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 118185-119138 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUNW01000004.1 Clostridioides difficile strain VRECD0041 genome assembly, contig: ERS716930SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 421412 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90946-91237 bp Zoom in on locus 1 x5 CRISPR array Location: 90946-91237 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 90946-91237 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90946-91237 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUNW01000001.1 Clostridioides difficile strain VRECD0041 genome assembly, contig: ERS716930SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1124703 bp; # of CRISPR array = 4; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 275097-275192 bp 2 Locus 2: 348472-356337 bp 3 Locus 3: 518888-519380 bp 4 Locus 4: 822957-824562 bp 5 Locus 5: 870371-870600 bp Zoom in on locus 1 x2 Zoom in on locus 2 Zoom in on locus 3 x8 Zoom in on locus 4 x25 Zoom in on locus 5 x4 CRISPR array Location: 275097-275192 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 275097-275192 bp Num of repeats: 2 Spacers: s1-s1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 348472-349581 bp Gene: pfam01881:cas6 Type: other Location: 349839-350576 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 350581-352056 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 352076-353089 bp Gene: cd09693:cas5 Type: Type-I Location: 353105-353902 bp Gene: cd09641:cas3HD Type: Type-I Location: 353929-356337 bp CRISPR array Location: 518888-519380 bp Num of repeats: 8 Spacers: s2-s8 CRISPR array Location: 518888-519380 bp Num of repeats: 8 Spacers: s2-s8 CRISPR array Location: 822957-824562 bp Num of repeats: 25 Spacers: s9-s32 CRISPR array Location: 822957-824562 bp Num of repeats: 25 Spacers: s9-s32 CRISPR array Location: 870371-870600 bp Num of repeats: 4 Spacers: s33-s35 CRISPR array Location: 870371-870600 bp Num of repeats: 4 Spacers: s33-s35 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 275097-275192 bp]: array | spacers
           [Locus range 518888-519380 bp]: array | spacers
           [Locus range 822957-824562 bp]: array | spacers
           [Locus range 870371-870600 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FUNW01000012.1 Clostridioides difficile strain VRECD0041 genome assembly, contig: ERS716930SCcontig000012, whole genome shotgun sequence

⇒Summary: seq-len = 101947 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 92694-92985 bp Zoom in on locus 1 x5 CRISPR array Location: 92694-92985 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 92694-92985 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 92694-92985 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)