CRISPRone

CRISPRone report for GCA_900164745.1_16852_2_38

♦ Seq 1: FUNX01000006.1 Clostridioides difficile strain VRECD0042 genome assembly, contig: ERS716931SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 313628 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 238813-238974 bp Zoom in on locus 1 x3 CRISPR array Location: 238813-238974 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 238813-238974 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 238813-238974 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUNX01000005.1 Clostridioides difficile strain VRECD0042 genome assembly, contig: ERS716931SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 371357 bp; # of CRISPR array = 3; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 247102-250232 bp 2 Locus 2: 305610-316189 bp Zoom in on locus 1 x2 x11 Zoom in on locus 2 x16 CRISPR array Location: 247102-247196 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 247102-247196 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 249550-250232 bp Num of repeats: 11 Spacers: s2-s11 CRISPR array Location: 249550-250232 bp Num of repeats: 11 Spacers: s2-s11 CRISPR array Location: 305610-306624 bp Num of repeats: 16 Spacers: s12-s26 CRISPR array Location: 305610-306624 bp Num of repeats: 16 Spacers: s12-s26 Gene: cd09725:cas2 Type: universal Location: 306808-307074 bp Gene: cd09722:cas1 Type: universal Location: 307077-308057 bp Gene: pfam01930:cas4 Type: Type-I Location: 308060-308578 bp Gene: cd09641:cas3HD Type: Type-I Location: 308626-310947 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 310958-311659 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 311661-312575 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 312577-314454 bp Gene: pfam01881:cas6 Type: other Location: 314460-315254 bp Gene: pfam13280:WYL Type: other Location: 315275-316189 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 247102-247196 bp]: array | spacers
           [Locus range 249550-250232 bp]: array | spacers
           [Locus range 305610-306624 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUNX01000002.1 Clostridioides difficile strain VRECD0042 genome assembly, contig: ERS716931SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 527850 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 60124-61205 bp 2 Locus 2: 237871-238362 bp 3 Locus 3: 348650-349006 bp Zoom in on locus 1 x17 Zoom in on locus 2 x8 Zoom in on locus 3 x6 CRISPR array Location: 60124-61205 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 60124-61205 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 237871-238362 bp Num of repeats: 8 Spacers: s17-s23 CRISPR array Location: 237871-238362 bp Num of repeats: 8 Spacers: s17-s23 CRISPR array Location: 348650-349006 bp Num of repeats: 6 Spacers: s24-s28 CRISPR array Location: 348650-349006 bp Num of repeats: 6 Spacers: s24-s28 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 60124-61205 bp]: array | spacers
           [Locus range 237871-238362 bp]: array | spacers
           [Locus range 348650-349006 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUNX01000001.1 Clostridioides difficile strain VRECD0042 genome assembly, contig: ERS716931SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 784546 bp; # of CRISPR array = 2; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 266578-266803 bp 2 Locus 2: 614992-615678 bp 3 Locus 3: 777650-784148 bp Zoom in on locus 1 x4 Zoom in on locus 2 x11 Zoom in on locus 3 CRISPR array Location: 266578-266803 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 266578-266803 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 614992-615678 bp Num of repeats: 11 Spacers: s4-s13 CRISPR array Location: 614992-615678 bp Num of repeats: 11 Spacers: s4-s13 Gene: cd09641:cas3HD Type: Type-I Location: 777650-780058 bp Gene: cd09693:cas5 Type: Type-I Location: 780085-780882 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 780898-781911 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 781931-783406 bp Gene: pfam01881:cas6 Type: other Location: 783411-784148 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 266578-266803 bp]: array | spacers
           [Locus range 614992-615678 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUNX01000004.1 Clostridioides difficile strain VRECD0042 genome assembly, contig: ERS716931SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 385482 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 107235-107328 bp Zoom in on locus 1 x2 CRISPR array Location: 107235-107328 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 107235-107328 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 107235-107328 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)