CRISPRone

CRISPRone report for GCA_900164755.1_16852_2_39

♦ Seq 1: FUNY01000002.1 Clostridioides difficile strain VRECD0044 genome assembly, contig: ERS716932SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 643982 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 189577-189870 bp 2 Locus 2: 396044-396465 bp 3 Locus 3: 506896-507123 bp Zoom in on locus 1 x5 Zoom in on locus 2 x7 Zoom in on locus 3 x4 CRISPR array Location: 189577-189870 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 189577-189870 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 396044-396465 bp Num of repeats: 7 Spacers: s5-s10 CRISPR array Location: 396044-396465 bp Num of repeats: 7 Spacers: s5-s10 CRISPR array Location: 506896-507123 bp Num of repeats: 4 Spacers: s11-s13 CRISPR array Location: 506896-507123 bp Num of repeats: 4 Spacers: s11-s13 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 189577-189870 bp]: array | spacers
           [Locus range 396044-396465 bp]: array | spacers
           [Locus range 506896-507123 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUNY01000001.1 Clostridioides difficile strain VRECD0044 genome assembly, contig: ERS716932SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 798827 bp; # of CRISPR array = 3; # of cas gene = 14  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 244752-245310 bp 2 Locus 2: 318557-326422 bp 3 Locus 3: 488390-489141 bp 4 Locus 4: 678643-690699 bp Zoom in on locus 1 x9 Zoom in on locus 2 Zoom in on locus 3 x12 Zoom in on locus 4 x46 CRISPR array Location: 244752-245310 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 244752-245310 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 318557-319666 bp Gene: pfam01881:cas6 Type: other Location: 319924-320661 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 320666-322141 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 322161-323174 bp Gene: cd09693:cas5 Type: Type-I Location: 323190-323987 bp Gene: cd09641:cas3HD Type: Type-I Location: 324014-326422 bp CRISPR array Location: 488390-489141 bp Num of repeats: 12 Spacers: s9-s19 CRISPR array Location: 488390-489141 bp Num of repeats: 12 Spacers: s9-s19 Gene: cd09652:cas6 Type: other Location: 678643-679338 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 679350-681089 bp Gene: pfam05107:cas7b Type: Type-I Location: 681082-682071 bp Gene: cd09693:cas5 Type: Type-I Location: 682073-682813 bp Gene: cd09641:cas3HD Type: Type-I Location: 682837-685395 bp CRISPR array Location: 685585-688587 bp Num of repeats: 46 Spacers: s20-s64 CRISPR array Location: 685585-688587 bp Num of repeats: 46 Spacers: s20-s64 Gene: pfam01930:cas4 Type: Type-I Location: 688671-689165 bp Gene: cd09722:cas1 Type: universal Location: 689191-690198 bp Gene: cd09725:cas2 Type: universal Location: 690409-690699 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 244752-245310 bp]: array | spacers
           [Locus range 488390-489141 bp]: array | spacers
           [Locus range 685585-688587 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUNY01000004.1 Clostridioides difficile strain VRECD0044 genome assembly, contig: ERS716932SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 506417 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 140404-140765 bp 2 Locus 2: 458626-458787 bp Zoom in on locus 1 x6 Zoom in on locus 2 x3 CRISPR array Location: 140404-140765 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 140404-140765 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 458626-458787 bp Num of repeats: 3 Spacers: s6-s7 CRISPR array Location: 458626-458787 bp Num of repeats: 3 Spacers: s6-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 140404-140765 bp]: array | spacers
           [Locus range 458626-458787 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)