CRISPRone

CRISPRone report for GCA_900164765.1_16852_2_41

♦ Seq 1: FUNZ01000006.1 Clostridioides difficile strain VRECD0047 genome assembly, contig: ERS716934SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 313860 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 74669-74829 bp Zoom in on locus 1 x3 CRISPR array Location: 74669-74829 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 74669-74829 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 74669-74829 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUNZ01000004.1 Clostridioides difficile strain VRECD0047 genome assembly, contig: ERS716934SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 475562 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 301074-311653 bp Zoom in on locus 1 x16 CRISPR array Location: 301074-302088 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 301074-302088 bp Num of repeats: 16 Spacers: s1-s15 Gene: cd09725:cas2 Type: universal Location: 302272-302538 bp Gene: cd09722:cas1 Type: universal Location: 302541-303521 bp Gene: pfam01930:cas4 Type: Type-I Location: 303524-304042 bp Gene: cd09641:cas3HD Type: Type-I Location: 304090-306411 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 306422-307123 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 307125-308039 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 308041-309918 bp Gene: pfam01881:cas6 Type: other Location: 309924-310718 bp Gene: pfam13280:WYL Type: other Location: 310739-311653 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 301074-302088 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUNZ01000007.1 Clostridioides difficile strain VRECD0047 genome assembly, contig: ERS716934SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 265451 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 408-6906 bp 2 Locus 2: 168878-169565 bp Zoom in on locus 1 Zoom in on locus 2 x11 Gene: pfam01881:cas6 Type: other Location: 408-1145 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 1150-2625 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2645-3658 bp Gene: cd09693:cas5 Type: Type-I Location: 3674-4471 bp Gene: cd09641:cas3HD Type: Type-I Location: 4498-6906 bp CRISPR array Location: 168878-169565 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 168878-169565 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 168878-169565 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUNZ01000003.1 Clostridioides difficile strain VRECD0047 genome assembly, contig: ERS716934SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 494175 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 241704-241929 bp Zoom in on locus 1 x4 CRISPR array Location: 241704-241929 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 241704-241929 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 241704-241929 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUNZ01000001.1 Clostridioides difficile strain VRECD0047 genome assembly, contig: ERS716934SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 737748 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 381999-382356 bp 2 Locus 2: 492643-493135 bp 3 Locus 3: 676528-677610 bp Zoom in on locus 1 x6 Zoom in on locus 2 x8 Zoom in on locus 3 x17 CRISPR array Location: 381999-382356 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 381999-382356 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 492643-493135 bp Num of repeats: 8 Spacers: s6-s12 CRISPR array Location: 492643-493135 bp Num of repeats: 8 Spacers: s6-s12 CRISPR array Location: 676528-677610 bp Num of repeats: 17 Spacers: s13-s28 CRISPR array Location: 676528-677610 bp Num of repeats: 17 Spacers: s13-s28 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 381999-382356 bp]: array | spacers
           [Locus range 492643-493135 bp]: array | spacers
           [Locus range 676528-677610 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FUNZ01000005.1 Clostridioides difficile strain VRECD0047 genome assembly, contig: ERS716934SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 385043 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 107172-107265 bp Zoom in on locus 1 x2 CRISPR array Location: 107172-107265 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 107172-107265 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 107172-107265 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)