CRISPRone

CRISPRone report for GCA_900164775.1_16852_2_42

♦ Seq 1: FUOB01000002.1 Clostridioides difficile strain VRECD0048 genome assembly, contig: ERS716935SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 702368 bp; # of CRISPR array = 5; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 100369-103585 bp 2 Locus 2: 193334-193560 bp 3 Locus 3: 303855-304275 bp 4 Locus 4: 512441-512733 bp Zoom in on locus 1 x10 x5 Zoom in on locus 2 x4 Zoom in on locus 3 x7 Zoom in on locus 4 x5 CRISPR array Location: 100369-100991 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 100369-100991 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 103295-103585 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 103295-103585 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 193334-193560 bp Num of repeats: 4 Spacers: s14-s16 CRISPR array Location: 193334-193560 bp Num of repeats: 4 Spacers: s14-s16 CRISPR array Location: 303855-304275 bp Num of repeats: 7 Spacers: s17-s22 CRISPR array Location: 303855-304275 bp Num of repeats: 7 Spacers: s17-s22 CRISPR array Location: 512441-512733 bp Num of repeats: 5 Spacers: s23-s26 CRISPR array Location: 512441-512733 bp Num of repeats: 5 Spacers: s23-s26 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 100369-100991 bp]: array | spacers
           [Locus range 103295-103585 bp]: array | spacers
           [Locus range 193334-193560 bp]: array | spacers
           [Locus range 303855-304275 bp]: array | spacers
           [Locus range 512441-512733 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUOB01000001.1 Clostridioides difficile strain VRECD0048 genome assembly, contig: ERS716935SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1173942 bp; # of CRISPR array = 5; # of cas gene = 14  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 248170-248728 bp 2 Locus 2: 321975-329840 bp 3 Locus 3: 491808-492823 bp 4 Locus 4: 682449-694505 bp 5 Locus 5: 850073-850235 bp 6 Locus 6: 1135235-1135595 bp Zoom in on locus 1 x9 Zoom in on locus 2 Zoom in on locus 3 x16 Zoom in on locus 4 x46 Zoom in on locus 5 x3 Zoom in on locus 6 x6 CRISPR array Location: 248170-248728 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 248170-248728 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 321975-323084 bp Gene: pfam01881:cas6 Type: other Location: 323342-324079 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 324084-325559 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 325579-326592 bp Gene: cd09693:cas5 Type: Type-I Location: 326608-327405 bp Gene: cd09641:cas3HD Type: Type-I Location: 327432-329840 bp CRISPR array Location: 491808-492823 bp Num of repeats: 16 Spacers: s9-s23 CRISPR array Location: 491808-492823 bp Num of repeats: 16 Spacers: s9-s23 Gene: cd09652:cas6 Type: other Location: 682449-683144 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 683156-684895 bp Gene: pfam05107:cas7b Type: Type-I Location: 684888-685877 bp Gene: cd09693:cas5 Type: Type-I Location: 685879-686619 bp Gene: cd09641:cas3HD Type: Type-I Location: 686643-689201 bp CRISPR array Location: 689391-692393 bp Num of repeats: 46 Spacers: s24-s68 CRISPR array Location: 689391-692393 bp Num of repeats: 46 Spacers: s24-s68 Gene: pfam01930:cas4 Type: Type-I Location: 692477-692971 bp Gene: cd09722:cas1 Type: universal Location: 692997-694004 bp Gene: cd09725:cas2 Type: universal Location: 694215-694505 bp CRISPR array Location: 850073-850235 bp Num of repeats: 3 Spacers: s69-s70 CRISPR array Location: 850073-850235 bp Num of repeats: 3 Spacers: s69-s70 CRISPR array Location: 1135235-1135595 bp Num of repeats: 6 Spacers: s71-s75 CRISPR array Location: 1135235-1135595 bp Num of repeats: 6 Spacers: s71-s75 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 248170-248728 bp]: array | spacers
           [Locus range 491808-492823 bp]: array | spacers
           [Locus range 689391-692393 bp]: array | spacers
           [Locus range 850073-850235 bp]: array | spacers
           [Locus range 1135235-1135595 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)