CRISPRone

CRISPRone report for GCA_900164795.1_16852_2_45

♦ Seq 1: FUOC01000006.1 Clostridioides difficile strain VRECD0051 genome assembly, contig: ERS716938SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 257956 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 485-6986 bp 2 Locus 2: 170258-170875 bp Zoom in on locus 1 Zoom in on locus 2 x10 Gene: pfam01881:cas6 Type: other Location: 485-1222 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 1227-2702 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2722-3738 bp Gene: cd09693:cas5 Type: Type-I Location: 3754-4551 bp Gene: cd09641:cas3HD Type: Type-I Location: 4578-6986 bp CRISPR array Location: 170258-170875 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 170258-170875 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 170258-170875 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUOC01000004.1 Clostridioides difficile strain VRECD0051 genome assembly, contig: ERS716938SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 402206 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 110288-110448 bp Zoom in on locus 1 x3 CRISPR array Location: 110288-110448 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 110288-110448 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 110288-110448 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUOC01000005.1 Clostridioides difficile strain VRECD0051 genome assembly, contig: ERS716938SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 319874 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 244892-245250 bp Zoom in on locus 1 x6 CRISPR array Location: 244892-245250 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 244892-245250 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 244892-245250 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUOC01000001.1 Clostridioides difficile strain VRECD0051 genome assembly, contig: ERS716938SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 769652 bp; # of CRISPR array = 7; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63672-64821 bp 2 Locus 2: 202679-207609 bp 3 Locus 3: 298339-298829 bp 4 Locus 4: 409151-409643 bp 5 Locus 5: 621322-622470 bp Zoom in on locus 1 x18 Zoom in on locus 2 x14 x4 x7 Zoom in on locus 3 x8 Zoom in on locus 4 x8 Zoom in on locus 5 x18 CRISPR array Location: 63672-64821 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 63672-64821 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 202679-203564 bp Num of repeats: 14 Spacers: s18-s30 CRISPR array Location: 202679-203564 bp Num of repeats: 14 Spacers: s18-s30 CRISPR array Location: 205358-205581 bp Num of repeats: 4 Spacers: s31-s33 CRISPR array Location: 205358-205581 bp Num of repeats: 4 Spacers: s31-s33 CRISPR array Location: 207186-207609 bp Num of repeats: 7 Spacers: s34-s39 CRISPR array Location: 207186-207609 bp Num of repeats: 7 Spacers: s34-s39 CRISPR array Location: 298339-298829 bp Num of repeats: 8 Spacers: s40-s46 CRISPR array Location: 298339-298829 bp Num of repeats: 8 Spacers: s40-s46 CRISPR array Location: 409151-409643 bp Num of repeats: 8 Spacers: s47-s53 CRISPR array Location: 409151-409643 bp Num of repeats: 8 Spacers: s47-s53 CRISPR array Location: 621322-622470 bp Num of repeats: 18 Spacers: s54-s70 CRISPR array Location: 621322-622470 bp Num of repeats: 18 Spacers: s54-s70 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63672-64821 bp]: array | spacers
           [Locus range 202679-203564 bp]: array | spacers
           [Locus range 205358-205581 bp]: array | spacers
           [Locus range 207186-207609 bp]: array | spacers
           [Locus range 298339-298829 bp]: array | spacers
           [Locus range 409151-409643 bp]: array | spacers
           [Locus range 621322-622470 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUOC01000003.1 Clostridioides difficile strain VRECD0051 genome assembly, contig: ERS716938SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 514866 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 259095-270232 bp 2 Locus 2: 492638-492731 bp Zoom in on locus 1 x25 Zoom in on locus 2 x2 CRISPR array Location: 259095-260694 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 259095-260694 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09725:cas2 Type: universal Location: 260878-261144 bp Gene: cd09722:cas1 Type: universal Location: 261147-262127 bp Gene: pfam01930:cas4 Type: Type-I Location: 262130-262648 bp Gene: COG1203:cas3 Type: Type-I Location: 262696-265017 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 265028-265729 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 265731-266645 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 266647-268497 bp Gene: pfam01881:cas6 Type: other Location: 268503-269297 bp Gene: pfam13280:WYL Type: other Location: 269318-270232 bp CRISPR array Location: 492638-492731 bp Num of repeats: 2 Spacers: s25-s25 CRISPR array Location: 492638-492731 bp Num of repeats: 2 Spacers: s25-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 259095-260694 bp]: array | spacers
           [Locus range 492638-492731 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FUOC01000017.1 Clostridioides difficile strain VRECD0051 genome assembly, contig: ERS716938SCcontig000017, whole genome shotgun sequence

⇒Summary: seq-len = 26987 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19302-19722 bp Zoom in on locus 1 x7 CRISPR array Location: 19302-19722 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 19302-19722 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 19302-19722 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)