CRISPRone

CRISPRone report for GCA_900164805.1_16852_2_46

♦ Seq 1: FUOE01000003.1 Clostridioides difficile strain VRECD0052 genome assembly, contig: ERS716939SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 577810 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 87083-87699 bp 2 Locus 2: 250971-259292 bp 3 Locus 3: 332575-332932 bp Zoom in on locus 1 x10 Zoom in on locus 2 Zoom in on locus 3 x6 CRISPR array Location: 87083-87699 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 87083-87699 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09641:cas3HD Type: Type-I Location: 250971-253379 bp Gene: cd09693:cas5 Type: Type-I Location: 253406-254203 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 254219-255235 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 255255-256730 bp Gene: pfam01881:cas6 Type: other Location: 256735-257472 bp Gene: unk Type: unknown Location: 257573-257749 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 258183-259292 bp CRISPR array Location: 332575-332932 bp Num of repeats: 6 Spacers: s10-s14 CRISPR array Location: 332575-332932 bp Num of repeats: 6 Spacers: s10-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 87083-87699 bp]: array | spacers
           [Locus range 332575-332932 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUOE01000008.1 Clostridioides difficile strain VRECD0052 genome assembly, contig: ERS716939SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 189414 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 125269-125828 bp Zoom in on locus 1 x9 CRISPR array Location: 125269-125828 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 125269-125828 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 125269-125828 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUOE01000005.1 Clostridioides difficile strain VRECD0052 genome assembly, contig: ERS716939SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 404771 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 93643-93804 bp Zoom in on locus 1 x3 CRISPR array Location: 93643-93804 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 93643-93804 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 93643-93804 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUOE01000004.1 Clostridioides difficile strain VRECD0052 genome assembly, contig: ERS716939SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 532089 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252748-263885 bp 2 Locus 2: 486098-486191 bp Zoom in on locus 1 x25 Zoom in on locus 2 x2 CRISPR array Location: 252748-254347 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 252748-254347 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09725:cas2 Type: universal Location: 254531-254797 bp Gene: cd09722:cas1 Type: universal Location: 254800-255780 bp Gene: pfam01930:cas4 Type: Type-I Location: 255783-256301 bp Gene: COG1203:cas3 Type: Type-I Location: 256349-258670 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 258681-259382 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 259384-260298 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 260300-262150 bp Gene: pfam01881:cas6 Type: other Location: 262156-262950 bp Gene: pfam13280:WYL Type: other Location: 262971-263885 bp CRISPR array Location: 486098-486191 bp Num of repeats: 2 Spacers: s25-s25 CRISPR array Location: 486098-486191 bp Num of repeats: 2 Spacers: s25-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252748-254347 bp]: array | spacers
           [Locus range 486098-486191 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUOE01000001.1 Clostridioides difficile strain VRECD0052 genome assembly, contig: ERS716939SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 783194 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 241849-242998 bp 2 Locus 2: 486586-487343 bp 3 Locus 3: 664092-665242 bp Zoom in on locus 1 x18 Zoom in on locus 2 x12 Zoom in on locus 3 x18 CRISPR array Location: 241849-242998 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 241849-242998 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 486586-487343 bp Num of repeats: 12 Spacers: s18-s28 CRISPR array Location: 486586-487343 bp Num of repeats: 12 Spacers: s18-s28 CRISPR array Location: 664092-665242 bp Num of repeats: 18 Spacers: s29-s45 CRISPR array Location: 664092-665242 bp Num of repeats: 18 Spacers: s29-s45 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 241849-242998 bp]: array | spacers
           [Locus range 486586-487343 bp]: array | spacers
           [Locus range 664092-665242 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)