CRISPRone

CRISPRone report for GCA_900164815.1_16852_2_47

♦ Seq 1: FUOD01000004.1 Clostridioides difficile strain VRECD0053 genome assembly, contig: ERS716940SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 307830 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 86128-87011 bp Zoom in on locus 1 x14 CRISPR array Location: 86128-87011 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 86128-87011 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 86128-87011 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUOD01000001.1 Clostridioides difficile strain VRECD0053 genome assembly, contig: ERS716940SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1735794 bp; # of CRISPR array = 6; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 278599-279157 bp 2 Locus 2: 380769-387270 bp 3 Locus 3: 549203-550090 bp 4 Locus 4: 946163-946324 bp 5 Locus 5: 1308437-1309519 bp 6 Locus 6: 1500990-1501545 bp 7 Locus 7: 1611871-1612629 bp Zoom in on locus 1 x9 Zoom in on locus 2 Zoom in on locus 3 x14 Zoom in on locus 4 x3 Zoom in on locus 5 x17 Zoom in on locus 6 x9 Zoom in on locus 7 x12 CRISPR array Location: 278599-279157 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 278599-279157 bp Num of repeats: 9 Spacers: s1-s8 Gene: pfam01881:cas6 Type: other Location: 380769-381506 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 381511-382986 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 383006-384022 bp Gene: cd09693:cas5 Type: Type-I Location: 384038-384835 bp Gene: cd09641:cas3HD Type: Type-I Location: 384862-387270 bp CRISPR array Location: 549203-550090 bp Num of repeats: 14 Spacers: s9-s21 CRISPR array Location: 549203-550090 bp Num of repeats: 14 Spacers: s9-s21 CRISPR array Location: 946163-946324 bp Num of repeats: 3 Spacers: s22-s23 CRISPR array Location: 946163-946324 bp Num of repeats: 3 Spacers: s22-s23 CRISPR array Location: 1308437-1309519 bp Num of repeats: 17 Spacers: s24-s39 CRISPR array Location: 1308437-1309519 bp Num of repeats: 17 Spacers: s24-s39 CRISPR array Location: 1500990-1501545 bp Num of repeats: 9 Spacers: s40-s47 CRISPR array Location: 1500990-1501545 bp Num of repeats: 9 Spacers: s40-s47 CRISPR array Location: 1611871-1612629 bp Num of repeats: 12 Spacers: s48-s58 CRISPR array Location: 1611871-1612629 bp Num of repeats: 12 Spacers: s48-s58 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 278599-279157 bp]: array | spacers
           [Locus range 549203-550090 bp]: array | spacers
           [Locus range 946163-946324 bp]: array | spacers
           [Locus range 1308437-1309519 bp]: array | spacers
           [Locus range 1500990-1501545 bp]: array | spacers
           [Locus range 1611871-1612629 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUOD01000002.1 Clostridioides difficile strain VRECD0053 genome assembly, contig: ERS716940SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 560877 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19846-19940 bp 2 Locus 2: 234568-245449 bp Zoom in on locus 1 x2 Zoom in on locus 2 x21 CRISPR array Location: 19846-19940 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 19846-19940 bp Num of repeats: 2 Spacers: s1-s1 Gene: pfam13280:WYL Type: other Location: 234568-235455 bp Gene: pfam01881:cas6 Type: other Location: 235533-236270 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 236276-238153 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 238155-239069 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 239071-239772 bp Gene: COG1203:cas3 Type: Type-I Location: 239783-242104 bp Gene: pfam01930:cas4 Type: Type-I Location: 242119-242670 bp Gene: cd09722:cas1 Type: universal Location: 242673-243653 bp Gene: cd09725:cas2 Type: universal Location: 243656-243922 bp CRISPR array Location: 244106-245449 bp Num of repeats: 21 Spacers: s2-s21 CRISPR array Location: 244106-245449 bp Num of repeats: 21 Spacers: s2-s21 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 19846-19940 bp]: array | spacers
           [Locus range 244106-245449 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)