CRISPRone

CRISPRone report for GCA_900164825.1_16852_2_50

♦ Seq 1: FUOI01000003.1 Clostridioides difficile strain VRECD0056 genome assembly, contig: ERS716943SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 591650 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 99696-100581 bp 2 Locus 2: 265617-273473 bp 3 Locus 3: 346921-347082 bp Zoom in on locus 1 x14 Zoom in on locus 2 Zoom in on locus 3 x3 CRISPR array Location: 99696-100581 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 99696-100581 bp Num of repeats: 14 Spacers: s1-s13 Gene: cd09641:cas3HD Type: Type-I Location: 265617-268025 bp Gene: cd09693:cas5 Type: Type-I Location: 268052-268849 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 268865-269878 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 269898-271364 bp Gene: pfam01881:cas6 Type: other Location: 271369-272106 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 272364-273473 bp CRISPR array Location: 346921-347082 bp Num of repeats: 3 Spacers: s14-s15 CRISPR array Location: 346921-347082 bp Num of repeats: 3 Spacers: s14-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 99696-100581 bp]: array | spacers
           [Locus range 346921-347082 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUOI01000004.1 Clostridioides difficile strain VRECD0056 genome assembly, contig: ERS716943SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 290996 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 47796-49400 bp Zoom in on locus 1 x25 CRISPR array Location: 47796-49400 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 47796-49400 bp Num of repeats: 25 Spacers: s1-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 47796-49400 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUOI01000022.1 Clostridioides difficile strain VRECD0056 genome assembly, contig: ERS716943SCcontig000022, whole genome shotgun sequence

⇒Summary: seq-len = 14216 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5158-5321 bp Zoom in on locus 1 x3 CRISPR array Location: 5158-5321 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 5158-5321 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5158-5321 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUOI01000002.1 Clostridioides difficile strain VRECD0056 genome assembly, contig: ERS716943SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 721803 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 151131-151225 bp 2 Locus 2: 435198-445378 bp Zoom in on locus 1 x2 Zoom in on locus 2 x10 CRISPR array Location: 151131-151225 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 151131-151225 bp Num of repeats: 2 Spacers: s1-s1 Gene: pfam13280:WYL Type: other Location: 435198-436112 bp Gene: pfam01881:cas6 Type: other Location: 436190-436927 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 436933-438810 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 438812-439726 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 439728-440429 bp Gene: COG1203:cas3 Type: Type-I Location: 440440-442761 bp Gene: pfam01930:cas4 Type: Type-I Location: 442776-443327 bp Gene: cd09722:cas1 Type: universal Location: 443330-444310 bp Gene: cd09725:cas2 Type: universal Location: 444313-444579 bp CRISPR array Location: 444763-445378 bp Num of repeats: 10 Spacers: s2-s10 CRISPR array Location: 444763-445378 bp Num of repeats: 10 Spacers: s2-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 151131-151225 bp]: array | spacers
           [Locus range 444763-445378 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUOI01000001.1 Clostridioides difficile strain VRECD0056 genome assembly, contig: ERS716943SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1071034 bp; # of CRISPR array = 5; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 377839-378263 bp 2 Locus 2: 492019-492642 bp 3 Locus 3: 573857-574018 bp 4 Locus 4: 712900-714312 bp 5 Locus 5: 1025852-1026080 bp Zoom in on locus 1 x7 Zoom in on locus 2 x10 Zoom in on locus 3 x3 Zoom in on locus 4 x22 Zoom in on locus 5 x4 CRISPR array Location: 377839-378263 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 377839-378263 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 492019-492642 bp Num of repeats: 10 Spacers: s7-s15 CRISPR array Location: 492019-492642 bp Num of repeats: 10 Spacers: s7-s15 CRISPR array Location: 573857-574018 bp Num of repeats: 3 Spacers: s16-s17 CRISPR array Location: 573857-574018 bp Num of repeats: 3 Spacers: s16-s17 CRISPR array Location: 712900-714312 bp Num of repeats: 22 Spacers: s18-s38 CRISPR array Location: 712900-714312 bp Num of repeats: 22 Spacers: s18-s38 CRISPR array Location: 1025852-1026080 bp Num of repeats: 4 Spacers: s39-s41 CRISPR array Location: 1025852-1026080 bp Num of repeats: 4 Spacers: s39-s41 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 377839-378263 bp]: array | spacers
           [Locus range 492019-492642 bp]: array | spacers
           [Locus range 573857-574018 bp]: array | spacers
           [Locus range 712900-714312 bp]: array | spacers
           [Locus range 1025852-1026080 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)