CRISPRone

CRISPRone report for GCA_900164835.1_16852_2_49

♦ Seq 1: FUOF01000003.1 Clostridioides difficile strain VRECD0055 genome assembly, contig: ERS716942SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 519013 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 260802-270889 bp Zoom in on locus 1 x9 Gene: pfam13280:WYL Type: other Location: 260802-261689 bp Gene: pfam01881:cas6 Type: other Location: 261767-262504 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 262510-264387 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 264389-265303 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 265305-266006 bp Gene: COG1203:cas3 Type: Type-I Location: 266017-268338 bp Gene: pfam01930:cas4 Type: Type-I Location: 268353-268823 bp Gene: cd09722:cas1 Type: universal Location: 268907-269887 bp Gene: cd09725:cas2 Type: universal Location: 269890-270156 bp CRISPR array Location: 270340-270889 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 270340-270889 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 270340-270889 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUOF01000001.1 Clostridioides difficile strain VRECD0055 genome assembly, contig: ERS716942SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1842148 bp; # of CRISPR array = 6; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 244762-245258 bp 2 Locus 2: 318540-326405 bp 3 Locus 3: 491931-492353 bp 4 Locus 4: 1166378-1167590 bp 5 Locus 5: 1341166-1341657 bp 6 Locus 6: 1451985-1452933 bp 7 Locus 7: 1666292-1666452 bp Zoom in on locus 1 x8 Zoom in on locus 2 Zoom in on locus 3 x7 Zoom in on locus 4 x19 Zoom in on locus 5 x8 Zoom in on locus 6 x15 Zoom in on locus 7 x3 CRISPR array Location: 244762-245258 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 244762-245258 bp Num of repeats: 8 Spacers: s1-s7 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 318540-319649 bp Gene: pfam01881:cas6 Type: other Location: 319907-320644 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 320649-322124 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 322144-323157 bp Gene: cd09693:cas5 Type: Type-I Location: 323173-323970 bp Gene: cd09641:cas3HD Type: Type-I Location: 323997-326405 bp CRISPR array Location: 491931-492353 bp Num of repeats: 7 Spacers: s8-s13 CRISPR array Location: 491931-492353 bp Num of repeats: 7 Spacers: s8-s13 CRISPR array Location: 1166378-1167590 bp Num of repeats: 19 Spacers: s14-s31 CRISPR array Location: 1166378-1167590 bp Num of repeats: 19 Spacers: s14-s31 CRISPR array Location: 1341166-1341657 bp Num of repeats: 8 Spacers: s32-s38 CRISPR array Location: 1341166-1341657 bp Num of repeats: 8 Spacers: s32-s38 CRISPR array Location: 1451985-1452933 bp Num of repeats: 15 Spacers: s39-s52 CRISPR array Location: 1451985-1452933 bp Num of repeats: 15 Spacers: s39-s52 CRISPR array Location: 1666292-1666452 bp Num of repeats: 3 Spacers: s53-s54 CRISPR array Location: 1666292-1666452 bp Num of repeats: 3 Spacers: s53-s54 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 244762-245258 bp]: array | spacers
           [Locus range 491931-492353 bp]: array | spacers
           [Locus range 1166378-1167590 bp]: array | spacers
           [Locus range 1341166-1341657 bp]: array | spacers
           [Locus range 1451985-1452933 bp]: array | spacers
           [Locus range 1666292-1666452 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUOF01000012.1 Clostridioides difficile strain VRECD0055 genome assembly, contig: ERS716942SCcontig000012, whole genome shotgun sequence

⇒Summary: seq-len = 30323 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22669-28337 bp Zoom in on locus 1 x2 x5 x5 CRISPR array Location: 22669-22761 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 22669-22761 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 25109-25401 bp Num of repeats: 5 Spacers: s2-s5 CRISPR array Location: 25109-25401 bp Num of repeats: 5 Spacers: s2-s5 CRISPR array Location: 28045-28337 bp Num of repeats: 5 Spacers: s6-s9 CRISPR array Location: 28045-28337 bp Num of repeats: 5 Spacers: s6-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 22669-22761 bp]: array | spacers
           [Locus range 25109-25401 bp]: array | spacers
           [Locus range 28045-28337 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)