CRISPRone

CRISPRone report for GCA_900164845.1_16852_2_48

♦ Seq 1: FUOJ01000003.1 Clostridioides difficile strain VRECD0054 genome assembly, contig: ERS716941SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 530980 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44787-44881 bp 2 Locus 2: 267093-278204 bp Zoom in on locus 1 x2 Zoom in on locus 2 x25 CRISPR array Location: 44787-44881 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 44787-44881 bp Num of repeats: 2 Spacers: s1-s1 Gene: pfam13280:WYL Type: other Location: 267093-267980 bp Gene: pfam01881:cas6 Type: other Location: 268058-268795 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 268801-270651 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 270653-271567 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 271569-272270 bp Gene: COG1203:cas3 Type: Type-I Location: 272281-274602 bp Gene: pfam01930:cas4 Type: Type-I Location: 274617-275168 bp Gene: cd09722:cas1 Type: universal Location: 275171-276151 bp Gene: cd09725:cas2 Type: universal Location: 276154-276420 bp CRISPR array Location: 276604-278204 bp Num of repeats: 25 Spacers: s2-s25 CRISPR array Location: 276604-278204 bp Num of repeats: 25 Spacers: s2-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 44787-44881 bp]: array | spacers
           [Locus range 276604-278204 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUOJ01000004.1 Clostridioides difficile strain VRECD0054 genome assembly, contig: ERS716941SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 402151 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 110313-110473 bp Zoom in on locus 1 x3 CRISPR array Location: 110313-110473 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 110313-110473 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 110313-110473 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUOJ01000023.1 Clostridioides difficile strain VRECD0054 genome assembly, contig: ERS716941SCcontig000023, whole genome shotgun sequence

⇒Summary: seq-len = 8380 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3599-8091 bp Zoom in on locus 1 x8 x4 x4 CRISPR array Location: 3599-4093 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 3599-4093 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 5956-6181 bp Num of repeats: 4 Spacers: s8-s10 CRISPR array Location: 5956-6181 bp Num of repeats: 4 Spacers: s8-s10 CRISPR array Location: 7865-8091 bp Num of repeats: 4 Spacers: s11-s13 CRISPR array Location: 7865-8091 bp Num of repeats: 4 Spacers: s11-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3599-4093 bp]: array | spacers
           [Locus range 5956-6181 bp]: array | spacers
           [Locus range 7865-8091 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUOJ01000002.1 Clostridioides difficile strain VRECD0054 genome assembly, contig: ERS716941SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 548416 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 83560-84176 bp 2 Locus 2: 247448-255769 bp 3 Locus 3: 329052-329409 bp Zoom in on locus 1 x10 Zoom in on locus 2 Zoom in on locus 3 x6 CRISPR array Location: 83560-84176 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 83560-84176 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09641:cas3HD Type: Type-I Location: 247448-249856 bp Gene: cd09693:cas5 Type: Type-I Location: 249883-250680 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 250696-251712 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 251732-253207 bp Gene: pfam01881:cas6 Type: other Location: 253212-253949 bp Gene: unk Type: unknown Location: 254050-254226 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 254660-255769 bp CRISPR array Location: 329052-329409 bp Num of repeats: 6 Spacers: s10-s14 CRISPR array Location: 329052-329409 bp Num of repeats: 6 Spacers: s10-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 83560-84176 bp]: array | spacers
           [Locus range 329052-329409 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUOJ01000005.1 Clostridioides difficile strain VRECD0054 genome assembly, contig: ERS716941SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 363502 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 227995-229144 bp Zoom in on locus 1 x18 CRISPR array Location: 227995-229144 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 227995-229144 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 227995-229144 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FUOJ01000024.1 Clostridioides difficile strain VRECD0054 genome assembly, contig: ERS716941SCcontig000024, whole genome shotgun sequence

⇒Summary: seq-len = 7918 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 281-5212 bp Zoom in on locus 1 x7 x4 x14 CRISPR array Location: 281-705 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 281-705 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 2309-2533 bp Num of repeats: 4 Spacers: s7-s9 CRISPR array Location: 2309-2533 bp Num of repeats: 4 Spacers: s7-s9 CRISPR array Location: 4326-5212 bp Num of repeats: 14 Spacers: s10-s22 CRISPR array Location: 4326-5212 bp Num of repeats: 14 Spacers: s10-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 281-705 bp]: array | spacers
           [Locus range 2309-2533 bp]: array | spacers
           [Locus range 4326-5212 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: FUOJ01000006.1 Clostridioides difficile strain VRECD0054 genome assembly, contig: ERS716941SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 363480 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 173940-174433 bp 2 Locus 2: 284724-285481 bp Zoom in on locus 1 x8 Zoom in on locus 2 x12 CRISPR array Location: 173940-174433 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 173940-174433 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 284724-285481 bp Num of repeats: 12 Spacers: s8-s18 CRISPR array Location: 284724-285481 bp Num of repeats: 12 Spacers: s8-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 173940-174433 bp]: array | spacers
           [Locus range 284724-285481 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)