CRISPRone

CRISPRone report for GCA_900164855.1_16852_2_66

♦ Seq 1: FUOG01000003.1 Clostridioides difficile strain VRECD0074 genome assembly, contig: ERS716959SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 508894 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22133-22227 bp 2 Locus 2: 244613-256055 bp Zoom in on locus 1 x2 Zoom in on locus 2 x30 CRISPR array Location: 22133-22227 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 22133-22227 bp Num of repeats: 2 Spacers: s1-s1 Gene: pfam13280:WYL Type: other Location: 244613-245500 bp Gene: pfam01881:cas6 Type: other Location: 245578-246315 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 246321-248171 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 248173-249087 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 249089-249790 bp Gene: COG1203:cas3 Type: Type-I Location: 249801-252122 bp Gene: pfam01930:cas4 Type: Type-I Location: 252137-252688 bp Gene: cd09722:cas1 Type: universal Location: 252691-253671 bp Gene: cd09725:cas2 Type: universal Location: 253674-253940 bp CRISPR array Location: 254124-256055 bp Num of repeats: 30 Spacers: s2-s30 CRISPR array Location: 254124-256055 bp Num of repeats: 30 Spacers: s2-s30 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 22133-22227 bp]: array | spacers
           [Locus range 254124-256055 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUOG01000008.1 Clostridioides difficile strain VRECD0074 genome assembly, contig: ERS716959SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 221429 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 190097-191574 bp Zoom in on locus 1 x23 CRISPR array Location: 190097-191574 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 190097-191574 bp Num of repeats: 23 Spacers: s1-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 190097-191574 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUOG01000004.1 Clostridioides difficile strain VRECD0074 genome assembly, contig: ERS716959SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 312475 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3842-5389 bp Zoom in on locus 1 x24 CRISPR array Location: 3842-5389 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 3842-5389 bp Num of repeats: 24 Spacers: s1-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3842-5389 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUOG01000002.1 Clostridioides difficile strain VRECD0074 genome assembly, contig: ERS716959SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 524083 bp; # of CRISPR array = 5; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 133699-138630 bp 2 Locus 2: 229360-230840 bp 3 Locus 3: 341162-342185 bp Zoom in on locus 1 x16 x4 x5 Zoom in on locus 2 x23 Zoom in on locus 3 x16 CRISPR array Location: 133699-134717 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 133699-134717 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 136511-136734 bp Num of repeats: 4 Spacers: s16-s18 CRISPR array Location: 136511-136734 bp Num of repeats: 4 Spacers: s16-s18 CRISPR array Location: 138339-138630 bp Num of repeats: 5 Spacers: s19-s22 CRISPR array Location: 138339-138630 bp Num of repeats: 5 Spacers: s19-s22 CRISPR array Location: 229360-230840 bp Num of repeats: 23 Spacers: s23-s44 CRISPR array Location: 229360-230840 bp Num of repeats: 23 Spacers: s23-s44 CRISPR array Location: 341162-342185 bp Num of repeats: 16 Spacers: s45-s59 CRISPR array Location: 341162-342185 bp Num of repeats: 16 Spacers: s45-s59 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 133699-134717 bp]: array | spacers
           [Locus range 136511-136734 bp]: array | spacers
           [Locus range 138339-138630 bp]: array | spacers
           [Locus range 229360-230840 bp]: array | spacers
           [Locus range 341162-342185 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUOG01000015.1 Clostridioides difficile strain VRECD0074 genome assembly, contig: ERS716959SCcontig000015, whole genome shotgun sequence

⇒Summary: seq-len = 119374 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 74745-75235 bp Zoom in on locus 1 x8 CRISPR array Location: 74745-75235 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 74745-75235 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 74745-75235 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FUOG01000005.1 Clostridioides difficile strain VRECD0074 genome assembly, contig: ERS716959SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 299623 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 415-6913 bp 2 Locus 2: 170288-171101 bp Zoom in on locus 1 Zoom in on locus 2 x13 Gene: pfam01881:cas6 Type: other Location: 415-1152 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 1157-2632 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2652-3665 bp Gene: cd09693:cas5 Type: Type-I Location: 3681-4478 bp Gene: cd09641:cas3HD Type: Type-I Location: 4505-6913 bp CRISPR array Location: 170288-171101 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 170288-171101 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 170288-171101 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: FUOG01000018.1 Clostridioides difficile strain VRECD0074 genome assembly, contig: ERS716959SCcontig000018, whole genome shotgun sequence

⇒Summary: seq-len = 52628 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 47189-47350 bp Zoom in on locus 1 x3 CRISPR array Location: 47189-47350 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 47189-47350 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 47189-47350 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)