CRISPRone

CRISPRone report for GCA_900164865.1_16852_2_65

♦ Seq 1: FUOH01000001.1 Clostridioides difficile strain VRECD0073 genome assembly, contig: ERS716958SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1202502 bp; # of CRISPR array = 5; # of cas gene = 14  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38344-38705 bp 2 Locus 2: 356384-356545 bp 3 Locus 3: 512000-523925 bp 4 Locus 4: 713428-714113 bp 5 Locus 5: 876081-883946 bp 6 Locus 6: 957194-957751 bp Zoom in on locus 1 x6 Zoom in on locus 2 x3 Zoom in on locus 3 x44 Zoom in on locus 4 x11 Zoom in on locus 5 Zoom in on locus 6 x9 CRISPR array Location: 38344-38705 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 38344-38705 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 356384-356545 bp Num of repeats: 3 Spacers: s6-s7 CRISPR array Location: 356384-356545 bp Num of repeats: 3 Spacers: s6-s7 Gene: cd09725:cas2 Type: universal Location: 512000-512290 bp Gene: cd09722:cas1 Type: universal Location: 512501-513508 bp Gene: pfam01930:cas4 Type: Type-I Location: 513534-514028 bp CRISPR array Location: 514113-516983 bp Num of repeats: 44 Spacers: s8-s50 CRISPR array Location: 514113-516983 bp Num of repeats: 44 Spacers: s8-s50 Gene: cd09641:cas3HD Type: Type-I Location: 517173-519731 bp Gene: cd09693:cas5 Type: Type-I Location: 519755-520495 bp Gene: pfam05107:cas7b Type: Type-I Location: 520497-521486 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 521479-523218 bp Gene: cd09652:cas6 Type: other Location: 523230-523925 bp CRISPR array Location: 713428-714113 bp Num of repeats: 11 Spacers: s51-s60 CRISPR array Location: 713428-714113 bp Num of repeats: 11 Spacers: s51-s60 Gene: cd09641:cas3HD Type: Type-I Location: 876081-878489 bp Gene: cd09693:cas5 Type: Type-I Location: 878516-879313 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 879329-880342 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 880362-881837 bp Gene: pfam01881:cas6 Type: other Location: 881842-882579 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 882837-883946 bp CRISPR array Location: 957194-957751 bp Num of repeats: 9 Spacers: s61-s68 CRISPR array Location: 957194-957751 bp Num of repeats: 9 Spacers: s61-s68 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38344-38705 bp]: array | spacers
           [Locus range 356384-356545 bp]: array | spacers
           [Locus range 514113-516983 bp]: array | spacers
           [Locus range 713428-714113 bp]: array | spacers
           [Locus range 957194-957751 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUOH01000002.1 Clostridioides difficile strain VRECD0073 genome assembly, contig: ERS716958SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 630784 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 383903-384324 bp 2 Locus 2: 494618-494845 bp Zoom in on locus 1 x7 Zoom in on locus 2 x4 CRISPR array Location: 383903-384324 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 383903-384324 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 494618-494845 bp Num of repeats: 4 Spacers: s7-s9 CRISPR array Location: 494618-494845 bp Num of repeats: 4 Spacers: s7-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 383903-384324 bp]: array | spacers
           [Locus range 494618-494845 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUOH01000019.1 Clostridioides difficile strain VRECD0073 genome assembly, contig: ERS716958SCcontig000019, whole genome shotgun sequence

⇒Summary: seq-len = 14066 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8689-8915 bp Zoom in on locus 1 x4 CRISPR array Location: 8689-8915 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 8689-8915 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8689-8915 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)