CRISPRone

CRISPRone report for GCA_900164875.1_16852_2_67

♦ Seq 1: FUOK01000006.1 Clostridioides difficile strain VRECD0075 genome assembly, contig: ERS716960SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 254814 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 389-6890 bp 2 Locus 2: 170162-170779 bp Zoom in on locus 1 Zoom in on locus 2 x10 Gene: pfam01881:cas6 Type: other Location: 389-1126 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 1131-2606 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2626-3642 bp Gene: cd09693:cas5 Type: Type-I Location: 3658-4455 bp Gene: cd09641:cas3HD Type: Type-I Location: 4482-6890 bp CRISPR array Location: 170162-170779 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 170162-170779 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 170162-170779 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUOK01000005.1 Clostridioides difficile strain VRECD0075 genome assembly, contig: ERS716960SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 334296 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 87162-88114 bp 2 Locus 2: 242383-242477 bp Zoom in on locus 1 x15 Zoom in on locus 2 x2 CRISPR array Location: 87162-88114 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 87162-88114 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 242383-242477 bp Num of repeats: 2 Spacers: s15-s15 CRISPR array Location: 242383-242477 bp Num of repeats: 2 Spacers: s15-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 87162-88114 bp]: array | spacers
           [Locus range 242383-242477 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUOK01000007.1 Clostridioides difficile strain VRECD0075 genome assembly, contig: ERS716960SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 249321 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4187-4544 bp Zoom in on locus 1 x6 CRISPR array Location: 4187-4544 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 4187-4544 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4187-4544 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUOK01000003.1 Clostridioides difficile strain VRECD0075 genome assembly, contig: ERS716960SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 506913 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252343-263283 bp 2 Locus 2: 485662-485755 bp Zoom in on locus 1 x22 Zoom in on locus 2 x2 CRISPR array Location: 252343-253745 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 252343-253745 bp Num of repeats: 22 Spacers: s1-s21 Gene: cd09725:cas2 Type: universal Location: 253929-254195 bp Gene: cd09722:cas1 Type: universal Location: 254198-255178 bp Gene: pfam01930:cas4 Type: Type-I Location: 255181-255699 bp Gene: COG1203:cas3 Type: Type-I Location: 255747-258068 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 258079-258780 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 258782-259696 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 259698-261548 bp Gene: pfam01881:cas6 Type: other Location: 261554-262348 bp Gene: pfam13280:WYL Type: other Location: 262369-263283 bp CRISPR array Location: 485662-485755 bp Num of repeats: 2 Spacers: s22-s22 CRISPR array Location: 485662-485755 bp Num of repeats: 2 Spacers: s22-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252343-253745 bp]: array | spacers
           [Locus range 485662-485755 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUOK01000004.1 Clostridioides difficile strain VRECD0075 genome assembly, contig: ERS716960SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 378496 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 86304-86464 bp Zoom in on locus 1 x3 CRISPR array Location: 86304-86464 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 86304-86464 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 86304-86464 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FUOK01000002.1 Clostridioides difficile strain VRECD0075 genome assembly, contig: ERS716960SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 536280 bp; # of CRISPR array = 6; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63652-64798 bp 2 Locus 2: 203205-208202 bp 3 Locus 3: 299050-299605 bp 4 Locus 4: 409927-410485 bp Zoom in on locus 1 x18 Zoom in on locus 2 x15 x4 x7 Zoom in on locus 3 x9 Zoom in on locus 4 x9 CRISPR array Location: 63652-64798 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 63652-64798 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 203205-204157 bp Num of repeats: 15 Spacers: s18-s31 CRISPR array Location: 203205-204157 bp Num of repeats: 15 Spacers: s18-s31 CRISPR array Location: 205951-206174 bp Num of repeats: 4 Spacers: s32-s34 CRISPR array Location: 205951-206174 bp Num of repeats: 4 Spacers: s32-s34 CRISPR array Location: 207779-208202 bp Num of repeats: 7 Spacers: s35-s40 CRISPR array Location: 207779-208202 bp Num of repeats: 7 Spacers: s35-s40 CRISPR array Location: 299050-299605 bp Num of repeats: 9 Spacers: s41-s48 CRISPR array Location: 299050-299605 bp Num of repeats: 9 Spacers: s41-s48 CRISPR array Location: 409927-410485 bp Num of repeats: 9 Spacers: s49-s56 CRISPR array Location: 409927-410485 bp Num of repeats: 9 Spacers: s49-s56 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63652-64798 bp]: array | spacers
           [Locus range 203205-204157 bp]: array | spacers
           [Locus range 205951-206174 bp]: array | spacers
           [Locus range 207779-208202 bp]: array | spacers
           [Locus range 299050-299605 bp]: array | spacers
           [Locus range 409927-410485 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)