CRISPRone

CRISPRone report for GCA_900164895.1_16852_2_69

♦ Seq 1: FUOL01000001.1 Clostridioides difficile strain VRECD0077 genome assembly, contig: ERS716962SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 718490 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 305996-306159 bp 2 Locus 2: 593835-595241 bp Zoom in on locus 1 x3 Zoom in on locus 2 x22 CRISPR array Location: 305996-306159 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 305996-306159 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 593835-595241 bp Num of repeats: 22 Spacers: s3-s23 CRISPR array Location: 593835-595241 bp Num of repeats: 22 Spacers: s3-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 305996-306159 bp]: array | spacers
           [Locus range 593835-595241 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUOL01000014.1 Clostridioides difficile strain VRECD0077 genome assembly, contig: ERS716962SCcontig000014, whole genome shotgun sequence

⇒Summary: seq-len = 114534 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 82805-82967 bp Zoom in on locus 1 x3 CRISPR array Location: 82805-82967 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 82805-82967 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 82805-82967 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUOL01000003.1 Clostridioides difficile strain VRECD0077 genome assembly, contig: ERS716962SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 390929 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 256078-266467 bp Zoom in on locus 1 x13 CRISPR array Location: 256078-256902 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 256078-256902 bp Num of repeats: 13 Spacers: s1-s12 Gene: cd09725:cas2 Type: universal Location: 257086-257352 bp Gene: cd09722:cas1 Type: universal Location: 257355-258335 bp Gene: pfam01930:cas4 Type: Type-I Location: 258338-258856 bp Gene: cd09641:cas3HD Type: Type-I Location: 258904-261225 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 261236-261937 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 261939-262853 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 262855-264732 bp Gene: pfam01881:cas6 Type: other Location: 264738-265532 bp Gene: pfam13280:WYL Type: other Location: 265553-266467 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 256078-256902 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUOL01000016.1 Clostridioides difficile strain VRECD0077 genome assembly, contig: ERS716962SCcontig000016, whole genome shotgun sequence

⇒Summary: seq-len = 79292 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 72145-74090 bp Zoom in on locus 1 x4 x2 CRISPR array Location: 72145-72370 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 72145-72370 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 73995-74090 bp Num of repeats: 2 Spacers: s4-s4 CRISPR array Location: 73995-74090 bp Num of repeats: 2 Spacers: s4-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 72145-72370 bp]: array | spacers
           [Locus range 73995-74090 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUOL01000006.1 Clostridioides difficile strain VRECD0077 genome assembly, contig: ERS716962SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 275207 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45718-46013 bp 2 Locus 2: 122083-129949 bp Zoom in on locus 1 x5 Zoom in on locus 2 CRISPR array Location: 45718-46013 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 45718-46013 bp Num of repeats: 5 Spacers: s1-s4 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 122083-123192 bp Gene: pfam01881:cas6 Type: other Location: 123451-124188 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 124193-125659 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 125679-126692 bp Gene: cd09693:cas5 Type: Type-I Location: 126708-127514 bp Gene: cd09641:cas3HD Type: Type-I Location: 127541-129949 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 45718-46013 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FUOL01000002.1 Clostridioides difficile strain VRECD0077 genome assembly, contig: ERS716962SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 522139 bp; # of CRISPR array = 3; # of cas gene = 3  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 313146-313304 bp 2 Locus 2: 392255-394546 bp 3 Locus 3: 516150-517137 bp Zoom in on locus 1 x3 Zoom in on locus 2 Zoom in on locus 3 x2 x5 CRISPR array Location: 313146-313304 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 313146-313304 bp Num of repeats: 3 Spacers: s1-s2 Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 392255-392854 bp Gene: unk Type: unknown Location: 393024-393491 bp Gene: COG2378:WYL Type: other Location: 393602-393925 bp Gene: pfam13280:WYL Type: other Location: 394043-394546 bp CRISPR array Location: 516150-516246 bp Num of repeats: 2 Spacers: s3-s3 CRISPR array Location: 516150-516246 bp Num of repeats: 2 Spacers: s3-s3 CRISPR array Location: 516848-517137 bp Num of repeats: 5 Spacers: s4-s7 CRISPR array Location: 516848-517137 bp Num of repeats: 5 Spacers: s4-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 313146-313304 bp]: array | spacers
           [Locus range 516150-516246 bp]: array | spacers
           [Locus range 516848-517137 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: FUOL01000020.1 Clostridioides difficile strain VRECD0077 genome assembly, contig: ERS716962SCcontig000020, whole genome shotgun sequence

⇒Summary: seq-len = 46498 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 41076-41236 bp Zoom in on locus 1 x3 CRISPR array Location: 41076-41236 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 41076-41236 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 41076-41236 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)