CRISPRone

CRISPRone report for GCA_900164905.1_16852_2_72

♦ Seq 1: FUON01000001.1 Clostridioides difficile strain VRECD0081 genome assembly, contig: ERS716965SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1437483 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 578426-578716 bp 2 Locus 2: 951519-952135 bp 3 Locus 3: 1115677-1124023 bp 4 Locus 4: 1197306-1197801 bp Zoom in on locus 1 x5 Zoom in on locus 2 x10 Zoom in on locus 3 Zoom in on locus 4 x8 CRISPR array Location: 578426-578716 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 578426-578716 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 951519-952135 bp Num of repeats: 10 Spacers: s5-s13 CRISPR array Location: 951519-952135 bp Num of repeats: 10 Spacers: s5-s13 Gene: cd09641:cas3HD Type: Type-I Location: 1115677-1118085 bp Gene: cd09693:cas5 Type: Type-I Location: 1118112-1118909 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1118925-1119941 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 1119961-1121436 bp Gene: pfam01881:cas6 Type: other Location: 1121441-1122178 bp Gene: unk Type: unknown Location: 1122279-1122455 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 1122914-1124023 bp CRISPR array Location: 1197306-1197801 bp Num of repeats: 8 Spacers: s14-s20 CRISPR array Location: 1197306-1197801 bp Num of repeats: 8 Spacers: s14-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 578426-578716 bp]: array | spacers
           [Locus range 951519-952135 bp]: array | spacers
           [Locus range 1197306-1197801 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUON01000002.1 Clostridioides difficile strain VRECD0081 genome assembly, contig: ERS716965SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 785849 bp; # of CRISPR array = 7; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63620-64957 bp 2 Locus 2: 238542-240218 bp 3 Locus 3: 350539-351362 bp 4 Locus 4: 570143-573177 bp 5 Locus 5: 595452-595874 bp Zoom in on locus 1 x21 Zoom in on locus 2 x26 Zoom in on locus 3 x13 Zoom in on locus 4 x2 x4 x15 Zoom in on locus 5 x7 CRISPR array Location: 63620-64957 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 63620-64957 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 238542-240218 bp Num of repeats: 26 Spacers: s21-s45 CRISPR array Location: 238542-240218 bp Num of repeats: 26 Spacers: s21-s45 CRISPR array Location: 350539-351362 bp Num of repeats: 13 Spacers: s46-s57 CRISPR array Location: 350539-351362 bp Num of repeats: 13 Spacers: s46-s57 CRISPR array Location: 570143-570237 bp Num of repeats: 2 Spacers: s58-s58 CRISPR array Location: 570143-570237 bp Num of repeats: 2 Spacers: s58-s58 CRISPR array Location: 570382-570607 bp Num of repeats: 4 Spacers: s59-s61 CRISPR array Location: 570382-570607 bp Num of repeats: 4 Spacers: s59-s61 CRISPR array Location: 572223-573177 bp Num of repeats: 15 Spacers: s62-s75 CRISPR array Location: 572223-573177 bp Num of repeats: 15 Spacers: s62-s75 CRISPR array Location: 595452-595874 bp Num of repeats: 7 Spacers: s76-s81 CRISPR array Location: 595452-595874 bp Num of repeats: 7 Spacers: s76-s81 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63620-64957 bp]: array | spacers
           [Locus range 238542-240218 bp]: array | spacers
           [Locus range 350539-351362 bp]: array | spacers
           [Locus range 570143-570237 bp]: array | spacers
           [Locus range 570382-570607 bp]: array | spacers
           [Locus range 572223-573177 bp]: array | spacers
           [Locus range 595452-595874 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUON01000005.1 Clostridioides difficile strain VRECD0081 genome assembly, contig: ERS716965SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 227995 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 145893-146843 bp Zoom in on locus 1 x15 CRISPR array Location: 145893-146843 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 145893-146843 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 145893-146843 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUON01000004.1 Clostridioides difficile strain VRECD0081 genome assembly, contig: ERS716965SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 509383 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 275391-285509 bp Zoom in on locus 1 x9 CRISPR array Location: 275391-275944 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 275391-275944 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09725:cas2 Type: universal Location: 276128-276394 bp Gene: cd09722:cas1 Type: universal Location: 276397-277377 bp Gene: pfam01930:cas4 Type: Type-I Location: 277380-277898 bp Gene: cd09641:cas3HD Type: Type-I Location: 277946-280267 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 280278-280979 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 280981-281895 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 281897-283774 bp Gene: pfam01881:cas6 Type: other Location: 283780-284574 bp Gene: pfam13280:WYL Type: other Location: 284595-285509 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 275391-275944 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)