CRISPRone

CRISPRone report for GCA_900164915.1_16852_2_73

♦ Seq 1: FUOO01000001.1 Clostridioides difficile strain VRECD0083 genome assembly, contig: ERS716966SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 726325 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 382250-382674 bp 2 Locus 2: 492994-493617 bp 3 Locus 3: 668274-669686 bp Zoom in on locus 1 x7 Zoom in on locus 2 x10 Zoom in on locus 3 x22 CRISPR array Location: 382250-382674 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 382250-382674 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 492994-493617 bp Num of repeats: 10 Spacers: s7-s15 CRISPR array Location: 492994-493617 bp Num of repeats: 10 Spacers: s7-s15 CRISPR array Location: 668274-669686 bp Num of repeats: 22 Spacers: s16-s36 CRISPR array Location: 668274-669686 bp Num of repeats: 22 Spacers: s16-s36 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 382250-382674 bp]: array | spacers
           [Locus range 492994-493617 bp]: array | spacers
           [Locus range 668274-669686 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUOO01000028.1 Clostridioides difficile strain VRECD0083 genome assembly, contig: ERS716966SCcontig000028, whole genome shotgun sequence

⇒Summary: seq-len = 13999 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8671-8833 bp Zoom in on locus 1 x3 CRISPR array Location: 8671-8833 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 8671-8833 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8671-8833 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUOO01000021.1 Clostridioides difficile strain VRECD0083 genome assembly, contig: ERS716966SCcontig000021, whole genome shotgun sequence

⇒Summary: seq-len = 27567 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7133-9317 bp Zoom in on locus 1 x3 x4 CRISPR array Location: 7133-7292 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 7133-7292 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 9093-9317 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 9093-9317 bp Num of repeats: 4 Spacers: s3-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7133-7292 bp]: array | spacers
           [Locus range 9093-9317 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUOO01000003.1 Clostridioides difficile strain VRECD0083 genome assembly, contig: ERS716966SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 428340 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 165706-175887 bp Zoom in on locus 1 x10 Gene: pfam13280:WYL Type: other Location: 165706-166620 bp Gene: pfam01881:cas6 Type: other Location: 166698-167435 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 167441-169318 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 169320-170234 bp Gene: cd09693:cas5 Type: Type-I Location: 170236-170937 bp Gene: COG1203:cas3 Type: Type-I Location: 170948-173269 bp Gene: pfam01930:cas4 Type: Type-I Location: 173284-173835 bp Gene: cd09722:cas1 Type: universal Location: 173838-174818 bp Gene: cd09725:cas2 Type: universal Location: 174821-175087 bp CRISPR array Location: 175271-175887 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 175271-175887 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 175271-175887 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUOO01000005.1 Clostridioides difficile strain VRECD0083 genome assembly, contig: ERS716966SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 262957 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 229866-230094 bp Zoom in on locus 1 x4 CRISPR array Location: 229866-230094 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 229866-230094 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 229866-230094 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FUOO01000013.1 Clostridioides difficile strain VRECD0083 genome assembly, contig: ERS716966SCcontig000013, whole genome shotgun sequence

⇒Summary: seq-len = 114400 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 32128-33798 bp Zoom in on locus 1 x26 CRISPR array Location: 32128-33798 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 32128-33798 bp Num of repeats: 26 Spacers: s1-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 32128-33798 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: FUOO01000002.1 Clostridioides difficile strain VRECD0083 genome assembly, contig: ERS716966SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 500398 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 48061-48156 bp 2 Locus 2: 121436-129301 bp 3 Locus 3: 291739-292165 bp Zoom in on locus 1 x2 Zoom in on locus 2 Zoom in on locus 3 x7 CRISPR array Location: 48061-48156 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 48061-48156 bp Num of repeats: 2 Spacers: s1-s1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 121436-122545 bp Gene: pfam01881:cas6 Type: other Location: 122803-123540 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 123545-125020 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 125040-126053 bp Gene: cd09693:cas5 Type: Type-I Location: 126069-126866 bp Gene: cd09641:cas3HD Type: Type-I Location: 126893-129301 bp CRISPR array Location: 291739-292165 bp Num of repeats: 7 Spacers: s2-s7 CRISPR array Location: 291739-292165 bp Num of repeats: 7 Spacers: s2-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 48061-48156 bp]: array | spacers
           [Locus range 291739-292165 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)