CRISPRone

CRISPRone report for GCA_900164925.1_16852_2_75

♦ Seq 1: FUOP01000003.1 Clostridioides difficile strain VRECD0086 genome assembly, contig: ERS716968SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 531100 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44995-45089 bp 2 Locus 2: 267382-278363 bp Zoom in on locus 1 x2 Zoom in on locus 2 x23 CRISPR array Location: 44995-45089 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 44995-45089 bp Num of repeats: 2 Spacers: s1-s1 Gene: pfam13280:WYL Type: other Location: 267382-268269 bp Gene: pfam01881:cas6 Type: other Location: 268347-269084 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 269090-270940 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 270942-271856 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 271858-272559 bp Gene: cd09641:cas3HD Type: Type-I Location: 272570-274891 bp Gene: pfam01930:cas4 Type: Type-I Location: 274906-275457 bp Gene: cd09722:cas1 Type: universal Location: 275460-276440 bp Gene: cd09725:cas2 Type: universal Location: 276443-276709 bp CRISPR array Location: 276893-278363 bp Num of repeats: 23 Spacers: s2-s23 CRISPR array Location: 276893-278363 bp Num of repeats: 23 Spacers: s2-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 44995-45089 bp]: array | spacers
           [Locus range 276893-278363 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUOP01000016.1 Clostridioides difficile strain VRECD0086 genome assembly, contig: ERS716968SCcontig000016, whole genome shotgun sequence

⇒Summary: seq-len = 14484 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8713-9795 bp Zoom in on locus 1 x17 CRISPR array Location: 8713-9795 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 8713-9795 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8713-9795 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUOP01000004.1 Clostridioides difficile strain VRECD0086 genome assembly, contig: ERS716968SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 376149 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 289647-289808 bp Zoom in on locus 1 x3 CRISPR array Location: 289647-289808 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 289647-289808 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 289647-289808 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUOP01000001.1 Clostridioides difficile strain VRECD0086 genome assembly, contig: ERS716968SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 848438 bp; # of CRISPR array = 6; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63671-63897 bp 2 Locus 2: 202020-206950 bp 3 Locus 3: 297679-298435 bp 4 Locus 4: 408727-409285 bp Zoom in on locus 1 x4 Zoom in on locus 2 x14 x4 x7 Zoom in on locus 3 x12 Zoom in on locus 4 x9 CRISPR array Location: 63671-63897 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 63671-63897 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 202020-202905 bp Num of repeats: 14 Spacers: s4-s16 CRISPR array Location: 202020-202905 bp Num of repeats: 14 Spacers: s4-s16 CRISPR array Location: 204699-204922 bp Num of repeats: 4 Spacers: s17-s19 CRISPR array Location: 204699-204922 bp Num of repeats: 4 Spacers: s17-s19 CRISPR array Location: 206527-206950 bp Num of repeats: 7 Spacers: s20-s25 CRISPR array Location: 206527-206950 bp Num of repeats: 7 Spacers: s20-s25 CRISPR array Location: 297679-298435 bp Num of repeats: 12 Spacers: s26-s36 CRISPR array Location: 297679-298435 bp Num of repeats: 12 Spacers: s26-s36 CRISPR array Location: 408727-409285 bp Num of repeats: 9 Spacers: s37-s44 CRISPR array Location: 408727-409285 bp Num of repeats: 9 Spacers: s37-s44 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63671-63897 bp]: array | spacers
           [Locus range 202020-202905 bp]: array | spacers
           [Locus range 204699-204922 bp]: array | spacers
           [Locus range 206527-206950 bp]: array | spacers
           [Locus range 297679-298435 bp]: array | spacers
           [Locus range 408727-409285 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUOP01000006.1 Clostridioides difficile strain VRECD0086 genome assembly, contig: ERS716968SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 257932 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 87107-87723 bp 2 Locus 2: 250995-257496 bp Zoom in on locus 1 x10 Zoom in on locus 2 CRISPR array Location: 87107-87723 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 87107-87723 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09641:cas3HD Type: Type-I Location: 250995-253403 bp Gene: cd09693:cas5 Type: Type-I Location: 253430-254227 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 254243-255259 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 255279-256754 bp Gene: pfam01881:cas6 Type: other Location: 256759-257496 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 87107-87723 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FUOP01000005.1 Clostridioides difficile strain VRECD0086 genome assembly, contig: ERS716968SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 341397 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 266434-266792 bp Zoom in on locus 1 x6 CRISPR array Location: 266434-266792 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 266434-266792 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 266434-266792 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)