CRISPRone

CRISPRone report for GCA_900164935.1_16852_2_74

♦ Seq 1: FUOQ01000002.1 Clostridioides difficile strain VRECD0084 genome assembly, contig: ERS716967SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 733162 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252435-262615 bp Zoom in on locus 1 x10 CRISPR array Location: 252435-253050 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 252435-253050 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09725:cas2 Type: universal Location: 253234-253500 bp Gene: cd09722:cas1 Type: universal Location: 253503-254483 bp Gene: pfam01930:cas4 Type: Type-I Location: 254486-255004 bp Gene: COG1203:cas3 Type: Type-I Location: 255052-257373 bp Gene: cd09693:cas5 Type: Type-I Location: 257384-258085 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 258087-259001 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 259003-260880 bp Gene: pfam01881:cas6 Type: other Location: 260886-261623 bp Gene: pfam13280:WYL Type: other Location: 261701-262615 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252435-253050 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUOQ01000003.1 Clostridioides difficile strain VRECD0084 genome assembly, contig: ERS716967SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 500411 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 48071-48166 bp 2 Locus 2: 121446-129311 bp 3 Locus 3: 291749-292175 bp Zoom in on locus 1 x2 Zoom in on locus 2 Zoom in on locus 3 x7 CRISPR array Location: 48071-48166 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 48071-48166 bp Num of repeats: 2 Spacers: s1-s1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 121446-122555 bp Gene: pfam01881:cas6 Type: other Location: 122813-123550 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 123555-125030 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 125050-126063 bp Gene: cd09693:cas5 Type: Type-I Location: 126079-126876 bp Gene: cd09641:cas3HD Type: Type-I Location: 126903-129311 bp CRISPR array Location: 291749-292175 bp Num of repeats: 7 Spacers: s2-s7 CRISPR array Location: 291749-292175 bp Num of repeats: 7 Spacers: s2-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 48071-48166 bp]: array | spacers
           [Locus range 291749-292175 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUOQ01000019.1 Clostridioides difficile strain VRECD0084 genome assembly, contig: ERS716967SCcontig000019, whole genome shotgun sequence

⇒Summary: seq-len = 27591 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7150-9334 bp Zoom in on locus 1 x3 x4 CRISPR array Location: 7150-7309 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 7150-7309 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 9110-9334 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 9110-9334 bp Num of repeats: 4 Spacers: s3-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7150-7309 bp]: array | spacers
           [Locus range 9110-9334 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUOQ01000001.1 Clostridioides difficile strain VRECD0084 genome assembly, contig: ERS716967SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1003183 bp; # of CRISPR array = 5; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 190466-190629 bp 2 Locus 2: 396199-396623 bp 3 Locus 3: 506943-507240 bp 4 Locus 4: 681897-683309 bp 5 Locus 5: 970104-970332 bp Zoom in on locus 1 x3 Zoom in on locus 2 x7 Zoom in on locus 3 x5 Zoom in on locus 4 x22 Zoom in on locus 5 x4 CRISPR array Location: 190466-190629 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 190466-190629 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 396199-396623 bp Num of repeats: 7 Spacers: s3-s8 CRISPR array Location: 396199-396623 bp Num of repeats: 7 Spacers: s3-s8 CRISPR array Location: 506943-507240 bp Num of repeats: 5 Spacers: s9-s12 CRISPR array Location: 506943-507240 bp Num of repeats: 5 Spacers: s9-s12 CRISPR array Location: 681897-683309 bp Num of repeats: 22 Spacers: s13-s33 CRISPR array Location: 681897-683309 bp Num of repeats: 22 Spacers: s13-s33 CRISPR array Location: 970104-970332 bp Num of repeats: 4 Spacers: s34-s36 CRISPR array Location: 970104-970332 bp Num of repeats: 4 Spacers: s34-s36 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 190466-190629 bp]: array | spacers
           [Locus range 396199-396623 bp]: array | spacers
           [Locus range 506943-507240 bp]: array | spacers
           [Locus range 681897-683309 bp]: array | spacers
           [Locus range 970104-970332 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUOQ01000011.1 Clostridioides difficile strain VRECD0084 genome assembly, contig: ERS716967SCcontig000011, whole genome shotgun sequence

⇒Summary: seq-len = 114407 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 32121-33791 bp Zoom in on locus 1 x26 CRISPR array Location: 32121-33791 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 32121-33791 bp Num of repeats: 26 Spacers: s1-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 32121-33791 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)