CRISPRone

CRISPRone report for GCA_900164945.1_16852_2_83

♦ Seq 1: FUOR01000004.1 Clostridioides difficile strain VRECD0100 genome assembly, contig: ERS716976SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 414434 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252372-263342 bp Zoom in on locus 1 x22 CRISPR array Location: 252372-253777 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 252372-253777 bp Num of repeats: 22 Spacers: s1-s21 Gene: cd09725:cas2 Type: universal Location: 253961-254227 bp Gene: cd09722:cas1 Type: universal Location: 254230-255210 bp Gene: pfam01930:cas4 Type: Type-I Location: 255213-255731 bp Gene: COG1203:cas3 Type: Type-I Location: 255779-258100 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 258111-258812 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 258814-259728 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 259730-261607 bp Gene: pfam01881:cas6 Type: other Location: 261613-262407 bp Gene: pfam13280:WYL Type: other Location: 262428-263342 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252372-253777 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUOR01000003.1 Clostridioides difficile strain VRECD0100 genome assembly, contig: ERS716976SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 600146 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 84390-87694 bp Zoom in on locus 1 x3 x5 x6 CRISPR array Location: 84390-84550 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 84390-84550 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 84695-84987 bp Num of repeats: 5 Spacers: s3-s6 CRISPR array Location: 84695-84987 bp Num of repeats: 5 Spacers: s3-s6 CRISPR array Location: 87335-87694 bp Num of repeats: 6 Spacers: s7-s11 CRISPR array Location: 87335-87694 bp Num of repeats: 6 Spacers: s7-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 84390-84550 bp]: array | spacers
           [Locus range 84695-84987 bp]: array | spacers
           [Locus range 87335-87694 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUOR01000002.1 Clostridioides difficile strain VRECD0100 genome assembly, contig: ERS716976SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 663634 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 219386-220006 bp 2 Locus 2: 330479-331303 bp Zoom in on locus 1 x10 Zoom in on locus 2 x13 CRISPR array Location: 219386-220006 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 219386-220006 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 330479-331303 bp Num of repeats: 13 Spacers: s10-s21 CRISPR array Location: 330479-331303 bp Num of repeats: 13 Spacers: s10-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 219386-220006 bp]: array | spacers
           [Locus range 330479-331303 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUOR01000012.1 Clostridioides difficile strain VRECD0100 genome assembly, contig: ERS716976SCcontig000012, whole genome shotgun sequence

⇒Summary: seq-len = 85261 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19836-19930 bp Zoom in on locus 1 x2 CRISPR array Location: 19836-19930 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 19836-19930 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 19836-19930 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUOR01000001.1 Clostridioides difficile strain VRECD0100 genome assembly, contig: ERS716976SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1234209 bp; # of CRISPR array = 4; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 308725-309085 bp 2 Locus 2: 382367-390713 bp 3 Locus 3: 552694-553313 bp 4 Locus 4: 913478-913703 bp 5 Locus 5: 1211801-1213077 bp Zoom in on locus 1 x6 Zoom in on locus 2 Zoom in on locus 3 x10 Zoom in on locus 4 x4 Zoom in on locus 5 x20 CRISPR array Location: 308725-309085 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 308725-309085 bp Num of repeats: 6 Spacers: s1-s5 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 382367-383476 bp Gene: unk Type: unknown Location: 383935-384111 bp Gene: pfam01881:cas6 Type: other Location: 384212-384949 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 384954-386429 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 386449-387465 bp Gene: cd09693:cas5 Type: Type-I Location: 387481-388278 bp Gene: cd09641:cas3HD Type: Type-I Location: 388305-390713 bp CRISPR array Location: 552694-553313 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 552694-553313 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 913478-913703 bp Num of repeats: 4 Spacers: s15-s17 CRISPR array Location: 913478-913703 bp Num of repeats: 4 Spacers: s15-s17 CRISPR array Location: 1211801-1213077 bp Num of repeats: 20 Spacers: s18-s36 CRISPR array Location: 1211801-1213077 bp Num of repeats: 20 Spacers: s18-s36 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 308725-309085 bp]: array | spacers
           [Locus range 552694-553313 bp]: array | spacers
           [Locus range 913478-913703 bp]: array | spacers
           [Locus range 1211801-1213077 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FUOR01000018.1 Clostridioides difficile strain VRECD0100 genome assembly, contig: ERS716976SCcontig000018, whole genome shotgun sequence

⇒Summary: seq-len = 15236 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8830-10039 bp Zoom in on locus 1 x19 CRISPR array Location: 8830-10039 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 8830-10039 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8830-10039 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)