CRISPRone

CRISPRone report for GCA_900164955.1_16852_2_82

♦ Seq 1: FUOS01000001.1 Clostridioides difficile strain VRECD0099 genome assembly, contig: ERS716975SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 548415 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 83567-84183 bp 2 Locus 2: 247455-255776 bp 3 Locus 3: 329059-329416 bp Zoom in on locus 1 x10 Zoom in on locus 2 Zoom in on locus 3 x6 CRISPR array Location: 83567-84183 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 83567-84183 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09641:cas3HD Type: Type-I Location: 247455-249863 bp Gene: cd09693:cas5 Type: Type-I Location: 249890-250687 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 250703-251719 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 251739-253214 bp Gene: pfam01881:cas6 Type: other Location: 253219-253956 bp Gene: unk Type: unknown Location: 254057-254233 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 254667-255776 bp CRISPR array Location: 329059-329416 bp Num of repeats: 6 Spacers: s10-s14 CRISPR array Location: 329059-329416 bp Num of repeats: 6 Spacers: s10-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 83567-84183 bp]: array | spacers
           [Locus range 329059-329416 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUOS01000003.1 Clostridioides difficile strain VRECD0099 genome assembly, contig: ERS716975SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 530835 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44797-44891 bp 2 Locus 2: 267130-278110 bp Zoom in on locus 1 x2 Zoom in on locus 2 x23 CRISPR array Location: 44797-44891 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 44797-44891 bp Num of repeats: 2 Spacers: s1-s1 Gene: pfam13280:WYL Type: other Location: 267130-268017 bp Gene: pfam01881:cas6 Type: other Location: 268095-268832 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 268838-270688 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 270690-271604 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 271606-272307 bp Gene: COG1203:cas3 Type: Type-I Location: 272318-274639 bp Gene: pfam01930:cas4 Type: Type-I Location: 274654-275205 bp Gene: cd09722:cas1 Type: universal Location: 275208-276188 bp Gene: cd09725:cas2 Type: universal Location: 276191-276457 bp CRISPR array Location: 276641-278110 bp Num of repeats: 23 Spacers: s2-s23 CRISPR array Location: 276641-278110 bp Num of repeats: 23 Spacers: s2-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 44797-44891 bp]: array | spacers
           [Locus range 276641-278110 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUOS01000004.1 Clostridioides difficile strain VRECD0099 genome assembly, contig: ERS716975SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 483795 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 391604-392163 bp Zoom in on locus 1 x9 CRISPR array Location: 391604-392163 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 391604-392163 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 391604-392163 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUOS01000005.1 Clostridioides difficile strain VRECD0099 genome assembly, contig: ERS716975SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 402813 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 110983-111143 bp Zoom in on locus 1 x3 CRISPR array Location: 110983-111143 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 110983-111143 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 110983-111143 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUOS01000006.1 Clostridioides difficile strain VRECD0099 genome assembly, contig: ERS716975SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 318094 bp; # of CRISPR array = 5; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18959-19716 bp 2 Locus 2: 110444-114980 bp 3 Locus 3: 253278-254428 bp Zoom in on locus 1 x12 Zoom in on locus 2 x7 x4 x8 Zoom in on locus 3 x18 CRISPR array Location: 18959-19716 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 18959-19716 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 110444-110868 bp Num of repeats: 7 Spacers: s12-s17 CRISPR array Location: 110444-110868 bp Num of repeats: 7 Spacers: s12-s17 CRISPR array Location: 112472-112696 bp Num of repeats: 4 Spacers: s18-s20 CRISPR array Location: 112472-112696 bp Num of repeats: 4 Spacers: s18-s20 CRISPR array Location: 114489-114980 bp Num of repeats: 8 Spacers: s21-s27 CRISPR array Location: 114489-114980 bp Num of repeats: 8 Spacers: s21-s27 CRISPR array Location: 253278-254428 bp Num of repeats: 18 Spacers: s28-s44 CRISPR array Location: 253278-254428 bp Num of repeats: 18 Spacers: s28-s44 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18959-19716 bp]: array | spacers
           [Locus range 110444-110868 bp]: array | spacers
           [Locus range 112472-112696 bp]: array | spacers
           [Locus range 114489-114980 bp]: array | spacers
           [Locus range 253278-254428 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)